BAC Information

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BAC

Clone NameMSMg01-492C16
Chromosome5 (Build37)
Map Location 71,494,298 - 71,494,403
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C16.T7 (MSMg01no492_c16.b1)MSMg01-492C16.TJ (MSMg01no492_c16.g1)
ACCAG569987AG569988
length661719
length of high quality
(start - end)
---106 (270 - 375)
definitionCHROMAT_FILE: MSMg01no492_c16.b1 PHD_FILE: MSMg01no492_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:19 2005CHROMAT_FILE: MSMg01no492_c16.g1 PHD_FILE: MSMg01no492_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATATTTGGGCGCTATAGACTCACATATTCGAAATCCGCGGAATCACAC
AGCTTTCCTGACACAATAATACTGCCAGTATTCAGACATGCTCTTCACAA
ACCCATTCCTGGTGATCAGATGTCAAAGAACTTAATTCTAGTCCAGATTT
ATTGTTGCTAGATCTCTAGAGTTTATGATTCCTTAAAGACTGTCTCATGA
AGGTGAGTACTGTTACTTTATTTCAATGGGCTGGCCACCCTTATACATGT
CTTGACATAAAGAAGAAAGCTATGTCAGAAACCAGATAATAAGTATTGTT
TATTATTCACAGCATTTATCCTGTGCTATAAGCATGGCCAATGTTCTGTA
CAGTCATGCATATGATGGTGTTGTGTGATGTTATTCCCCTAGCCTCATCT
CTAAAGACAAGATTATTACTTGTACAGTTTTAGGGATGCAATAAACTTAA
AGTCCCCAGTACCTAAAAAACCTGGCAAGAGTTCCTTCGCCTATAACTTC
TAAAAAGGAATCAAGGCAGGTAATGCTTGGATCCAAAAAATTAACCCATT
CTCCCATCCTTTTTAAAACCCTTTACCCACTTTTGGGTTTTAAACCTTTT
GACAAAAGCGATACCCACCCAAAAACTTTTCTCCTTGGTTATTTTTCCCC
CCTTAAAAAAN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCTTCTAAATGTAGAGACAAGGCTCTA
ACAGCTTTCAAATACTTCTGTAGTAACACCAAAAAAACCTGTGTACTTTT
GCCTACTATTTGGTTATATTCTGTGCACTTATATAAACCCACAGAGTCCT
CATGACAACCAAATGAAATAGGATCTGCAACTACTTTTATTCTTTGTGAA
TGAAAAACAAGATGATGGAGGTAAAGAATTTTTCTGAAGCTGAATGGTTC
GAGTGTCAATAATATGTTCATCTTGGTGTTAGAAGGTTATTAATTCTTAG
CATAACTGTTGTCTCTCACTGTTAGTGAAGGAGATTTGATATTATATATA
AACATTCTTGTCCTCCCTCACACATTTAGTAGGTACCTTGTCCTTTGATT
TATTTCATTTATTCCCAAGAATCTCCCATGAAACCATAGATATTTGCTTC
AATGTGCTCCAAAGAAGAAGAAAGAGATCGCCAGGGAAAAGAAATTTTCA
AATTATCTAAAGTCATCATACAAGTAGAATGCTAGAGGCACTTCCCTGCG
GACTTCATCCCATTCTGAATATGATGTTAAAGGAAAAGAACATTTGAGAT
TCAGCAATCCTCTTTTAAGGTGTGAATGTCCCTGTTCTTGCTCAATTCAC
ACACTGAATGTTTATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c16.g1 MSMg01no492_c16.g1 CHROMAT_FILE:
MSMg01no492_c16.g1 PHD_FILE: MSMg01no492_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:19 2005
         (106 letters)



>mm_chr5_71494098_71494603
          Length = 506

 Score =  190 bits (98), Expect = 3e-53
 Identities = 104/106 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtaaagaatttttctgaagctgaatggttcgagtgtcaataatatgttcatcttggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 306 ggtaaagaatttttctgaagctgaatggttcgagtgtcaataagatgttcatcttggtgt 247

                                                         
Query: 61  tagaaggttattaattcttagcataactgttgtctctcactgttag 106
           |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 246 tagaaggtaattaattcttagcataactgttgtctctcactgttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)