BAC Information

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BAC

Clone NameMSMg01-492H02
Chromosome5 (Build37)
Map Location 86,135,383 - 86,135,695
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H02.T7 (MSMg01no492_h02.b1)MSMg01-492H02.TJ (MSMg01no492_h02.g1)
ACCAG570197AG570198
length742733
length of high quality
(start - end)
186 (120 - 305)311 (229 - 539)
definitionCHROMAT_FILE: MSMg01no492_h02.b1 PHD_FILE: MSMg01no492_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:40 2005CHROMAT_FILE: MSMg01no492_h02.g1 PHD_FILE: MSMg01no492_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAGACCGCGGA
ATTCAAGGCCCTCCCCTAAACAGGATAAAAGCAATCTACAACAGACCAGT
AGCCGACAGCAAAGTGAATGGAGAGAAGCTGGAAGCAATGCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAGGAGGAAGTCAAAGTATCACTTTTTGCAGATGATGATG
ATAGTATAGATAAGTGATCTGTAAAAATTGCAGCCAGAGAACTCCTAAAG
CTGATAAACAGCTTCGGGGAAGGAGCTGGATATAAAATTAACTCACGCAA
GTCAATGGCCTTTCTCGTCGCAAAGAATAAACAGGCTGAGAAAGAAATTG
TGGGAAACAACACCGTTTTGCATAGTCACGAGTAATATAAAATATCTCCG
AGTGGCTCTCACTAAGGAAGTGAAAGATCTGCATGAGAAGAAATTCGAGT
CTCTGGAGAAAGAAATTGAATAAGATCTCAGAAGATGGAGAGACCTCCCA
TGCTTGTGGACGGGCAGGATAAATATTGCACAAATTGTTATCTTGCTCAA
AGCCATCTACGGATTCAAGGCAATCCCATCCAAATTTTCACCTCCTTTCC
TTCTGGAGTTTACAGGATTCATCGTGCCATTTACTCCGGGAA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCACTCACTCCCTCCTGTAAGGATTTGAAG
GGCTCCTCTGTTTGTTATAACAGAGGACAAAGGGAAGGGATGCAGAAGCC
ATGAGCTCTTTACTTGAAAACAAAGAGCAAGCTGTTGGATTCGGGGAGTC
TGCATACCAACAAATAAGACATTGGAAAGGCCCATACCCGAGGGAAGCAA
CCTTCCTCATTAAGGGAACCATAAACACCTTTCTTCAGGGAACAGTAGGC
ATATGTAAAAGTAAAGACCCAGTTGTAATTAGAGCTTTAATCTAAATGCT
TTAACAAATCCATTCAGGCCAGTTTATTTAATAGCCACTAACAGGAATTA
GAGAATCTTAACAATTAAAGAAAATTTAAAACATCAATAGTTATAGACAT
AAAACTGATCTTTTTTTTTCTATTTAAGATTTGCTATTTTCCAGATGCTG
TGCTAAGCACTTTATATTTGTTGAATTATTTAATCTTCACAATACACGAT
GAGACAAATACTTATTTTAACAGCTGCTTTATACATGAAGGAATAATCAC
TTGTGGTAGCCAAGGCTTTTGCCCCCTGAAAGGCTGCAAAGCCCTTTCTA
AGGAATTGCCTCGGTCTGAGTGTCATCTGTTTTTTACCCCTTAATTGCAT
GACACAGTGTTATCCAGCCTATTCCCCTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h02.g1 MSMg01no492_h02.g1 CHROMAT_FILE:
MSMg01no492_h02.g1 PHD_FILE: MSMg01no492_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:40 2005
         (311 letters)



>mm_chr5_86135183_86135894
          Length = 712

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%), Gaps = 2/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcccataccc-gagggaagcaaccttcctcattaagggaaccataaacacctttcttca 59
           ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ggcccatacccggagggaagcaaccttcctcattaaggtaaccataaacacctttcttca 260

                                                                       
Query: 60  gggaacagtaggcatatgtaaaagtaaagacccagttgtaattagagctttaatctaaat 119
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gggaacagtaagcatatgtaaaagtaaaaacccagttgtaattagagctttaatctaaat 320

                                                                       
Query: 120 gctttaacaaatccattcaggccagtttatttaatagccactaacaggaattagagaatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctttaacaaatccattcaggccagtttatttaatagccactaacaggaattagagaatc 380

                                                                       
Query: 180 ttaacaattaaagaaaatttaaaacatcaatagttatagacataaaactgatcttttttt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaacaattaaagaaaatttaaaacatcaatagttatagacataaaactgatcttttttt 440

                                                                       
Query: 240 tt-ctatttaagatttgctattttccagatgctgtgctaagcactttatatttgttgaat 298
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tttctatttaagatttgctattttccagatgctgtgctaagtactttatatttgttgaat 500

                        
Query: 299 tatttaatcttca 311
           |||||||||||||
Sbjct: 501 tatttaatcttca 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 712
Length adjustment: 9
Effective length of query: 302
Effective length of database: 703
Effective search space:   212306
Effective search space used:   212306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)