BAC Information

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BAC

Clone NameMSMg01-492J04
Chromosome5 (Build37)
Map Location 122,194,083 - 122,385,617
singlet/doubletdoublet
Overlap geneAtxn2, Sh2b3, A230106M15Rik, Cutl2
Upstream geneOas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap
Downstream geneLOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492J04.T7 (MSMg01no492_j04.b1)MSMg01-492J04.TJ (MSMg01no492_j04.g1)
ACCAG570297AG570298
length695690
length of high quality
(start - end)
203 (112 - 314)423 (129 - 551)
definitionCHROMAT_FILE: MSMg01no492_j04.b1 PHD_FILE: MSMg01no492_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:50 2005CHROMAT_FILE: MSMg01no492_j04.g1 PHD_FILE: MSMg01no492_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,385,423 - 122,385,617)(122,194,083 - 122,194,505)
sequence
CCCAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGGTCCTTCCCAAGAGAATCGAGCGATCTTAACCACCAGGC
TGGCTCTCCAACCTGGGCTCAGGTTTCCGAGACCCCCACCTTGGCAGAGG
GGCATTCTGCTCCCTGAAGCTCACTGAAGGAAAGCTGCGGGATGAGAGTC
AGGAGCGAAGAGACAGTCAGGGCAGAGAGGAGCTGTGCTTCTGAGCCCCA
TGCGTGGGGTCCCTATTGGTTTTTAAGCCCTAGCAATTATAGAGAGTGCT
TGAAACACGGCAGCTTTCCTCCTGTTGTCTGGTCAGATCCTCAGGTCAGG
ATAAAAGGTGCCTGGCTTCACAGATGAGCAAAACTCACAGGCCCAGAGCA
TCTGGATGGGCCACCACACCCGCTCACGCCTGTTTACAGTGCCACGCGGG
TCCAGGCACTTCATCAGGAAGTCCGCTGCGTCTTTCCATCCCTCTCCTGT
TTCAACGCCGGAGTAAGAAAGTGTCAAGATTACTCTTTGGCTTTCTATAT
CTGTGTGAGGGCTTTGTAGTGCTGAGATGTTTTCTTCCATATTCCTCATG
CGTACACCTGTGTGTGACCCTGTGTGGAGGCAGAGGAATGGCTTCCTGTG
TCTTCACTCTCATGCGCTCCAGACACTAGAGGTTCAACTTCGCCC
NCCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTATTTGTGAGAAACT
CAATCTTTCCTTTTAGAAGAAGCCTTCAGTTGTACAGGTTTAAGACTTGC
AGGTTGAACTAACAGTGGGTAGAAAGGATCGGGGGAAACTGTACCAGCAA
GGACTGTGGGTCATGTTTTTTTCCCCTTGTCATTCTCTAAATAATACAGT
TGTGTATATGTAGCATCTTCAATTGACTAGATATTAAATAATAAATGAGG
TATGTGGGTCATGCAAATACCATATAAGTGATTTGAACATCATTGAATTT
TGGTTCTGATGGAATCTTGAACCAATCCCCTAGAGTACAGAGGAACAATG
GTGTTATTTATTATGATTCAGTTCACTTGAAAATAGTCCACATTACAAAG
GCACCATTTGATAGCAGGGTTTTATGTTGTTTAATGTGGGTTTTGTTTGT
TTCTGCAGTGCTGGAAACTGAGTTGAGGGCTCAAAAACAATAAGCAAGCA
GACTGTAGCCCCCCCCCCCCCTCCAGCTGAAGACCTCTGAGGCAAGCACT
CTACCTCGACCTAAATCTCCAACTCCTAAGCAAGCATACTCTACTGCAAG
CTATATTCCTAACCTGGTAGCTGAGTTTTGTGTACTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_j04.b1 MSMg01no492_j04.b1 CHROMAT_FILE:
MSMg01no492_j04.b1 PHD_FILE: MSMg01no492_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:50 2005
         (203 letters)



>mm_chr5_122385223_122385825
          Length = 603

 Score =  346 bits (179), Expect = e-100
 Identities = 191/195 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgggctcaggtttccgagacccccaccttggcagaggggcattctgctccctgaagct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 395 cctgggctcaggtttccgagacccccaccttggcagaggggcgttctgctccctgaagct 336

                                                                       
Query: 61  cactgaaggaaagctgcgggatgagagtcaggagcgaagagacagtcagggcagagagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cactgaaggaaagctgcgggatgagagtcaggagcgaagagacagtcagggcagagagga 276

                                                                       
Query: 121 gctgtgcttctgagccccatgcgtggggtccctattggtttttaagccctagcaattata 180
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| 
Sbjct: 275 gctgtgcttctgagccccatgcgtggggtccctgttggtttttaagctctagcaattatg 216

                          
Query: 181 gagagtgcttgaaac 195
           |||||||||||||||
Sbjct: 215 gagagtgcttgaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space:   116025
Effective search space used:   116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no492_j04.g1 MSMg01no492_j04.g1 CHROMAT_FILE:
MSMg01no492_j04.g1 PHD_FILE: MSMg01no492_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:50 2005
         (423 letters)



>mm_chr5_122193883_122194705
          Length = 823

 Score =  803 bits (415), Expect = 0.0
 Identities = 421/423 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgtacaggtttaagacttgcaggttgaactaacagtgggtagaaaggatcgggggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 gttgtacaggtttaagacttgcaggttgaactaacagtgggtagaaaggatcgggagaaa 260

                                                                       
Query: 61  ctgtaccagcaaggactgtgggtcatgtttttttccccttgtcattctctaaataataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtaccagcaaggactgtgggtcatgtttttttccccttgtcattctctaaataataca 320

                                                                       
Query: 121 gttgtgtatatgtagcatcttcaattgactagatattaaataataaatgaggtatgtggg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtgtatatgtaacatcttcaattgactagatattaaataataaatgaggtatgtggg 380

                                                                       
Query: 181 tcatgcaaataccatataagtgatttgaacatcattgaattttggttctgatggaatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgcaaataccatataagtgatttgaacatcattgaattttggttctgatggaatctt 440

                                                                       
Query: 241 gaaccaatcccctagagtacagaggaacaatggtgttatttattatgattcagttcactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaccaatcccctagagtacagaggaacaatggtgttatttattatgattcagttcactt 500

                                                                       
Query: 301 gaaaatagtccacattacaaaggcaccatttgatagcagggttttatgttgtttaatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaatagtccacattacaaaggcaccatttgatagcagggttttatgttgtttaatgtg 560

                                                                       
Query: 361 ggttttgtttgtttctgcagtgctggaaactgagttgagggctcaaaaacaataagcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttttgtttgtttctgcagtgctggaaactgagttgagggctcaaaaacaataagcaag 620

              
Query: 421 cag 423
           |||
Sbjct: 621 cag 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)