BAC Information

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BAC

Clone NameMSMg01-492P20
Chromosome5 (Build37)
Map Location 74,640,744 - 74,778,072
singlet/doubletdoublet
Overlap genenone
Upstream geneFryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18, Usp46, 2700023E23Rik, Rasl11b
Downstream geneScfd2, Fip1l1, Lnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492P20.T7 (MSMg01no492_p20.b1)MSMg01-492P20.TJ (MSMg01no492_p20.g1)
ACCAG570615AG570616
length727719
length of high quality
(start - end)
614 (68 - 681)508 (190 - 697)
definitionCHROMAT_FILE: MSMg01no492_p20.b1 PHD_FILE: MSMg01no492_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:22 2005CHROMAT_FILE: MSMg01no492_p20.g1 PHD_FILE: MSMg01no492_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,777,723 - 74,778,072)(74,640,744 - 74,641,250)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTAAATATTCTCATACATCTTCTCAGTCGGTATTGTGTTACTTGTATGC
ATATATTTTCAGTGCTGACCATTCGGTATTGGATAAACAATAAGTGTGCC
CTTCCGCAGTGCAGACTGTCTCCTGGTCTCAGGACTCTTAGTGGACTGTA
ATTCTTTGTGTAGGTTTTAGCCTCACGGGCATTCCCCATGCTTGTCTGTT
GGTGCTTGTGTTTCCCACATGTAGGCAGTCAAGTTGGTGAGACTTTATGA
GTGTACCTCTGACATTCCTAGGAGACACAGTCTCACAGGAAGTTTCCTGT
TCCTCCAGCATACAGATTTATTAATATTAAGAATTAACAATGCTCCTGCA
TAGTTATAACTAGCTGTCTTCCTGCTATGATATGTGAAAGAGCATGCTTT
CCTTAAGCCTCACCAATATACCATACTGTTAAGCTTCCAAAGTTTTGTCA
ATCTTTGGGGTGATAAATGCAATTTTGGTATCAGATATCATTTCAATTTT
ATACTTTTTCTTTTAAGTAGGTGAAGTTGAAGGTATTTTCACATTTCAAT
TTAACTTATCTTATTGTCTATGATTGCTTGCTTTTTGCTTCCCCTTTTAA
AAATATACTATTTTATTGTCCTTTTAATCAAAAAATTTAAGTCATTTATA
AATTACTTTAATTATCTATTTGTATAT
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCAGAAATCACTCTCGCACAGCTGTTAAATCATTTAAGGCA
CCGCAAAGGGATCCGGACTTCTCCACTCATAGCATGTGGAGGAGCAGAGT
TTGAGTCTGTGTCACTAAGGAGGTGAGCATCGAGCTTCAGGTCACATGTG
TCACCTGTCACGCTGGCGCCACGACAAAGCCAGATCTCTTTCATGTCATG
TTGACCTGGCCCCTTTCCCAGTCACAAACCTTTCTGTAAGCAGGAAAATG
CTTGCACAATATTTTATGCTTACTGGCTTTGACATCGCCACAGGCAGCTG
GCACACAGGCCCCTACACAGCCAAGGATTCAAAGGAGCAGATCTCACAGT
GAGCTGCCCTAAGTGGTGGCTTGTTCTTATGTCAGTGAGCTAATTCTATT
GAATTACAAATTTGCGGTTCACACTCTTTAATATATCCCCTTTCAACCTG
AGTGGACATTTTTTGGCGCCTCTGAAGAGCATCTTGTGGTTTGCTGTCTC
TCAGCGCTGACTTTGGGAGGGTCTCTGCATCTGTCAGGTGCAGGGAACTG
GGTGAGGCCAGACCTTCTCCATGCAGGGTGACAATTCTGTTGGTTTTACT
TTCTGCACCACATAAGGAGCTACTATGCAAAGGACTCACCATACCACGCC
CATGGACGAAGCTCAGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_p20.b1 MSMg01no492_p20.b1 CHROMAT_FILE:
MSMg01no492_p20.b1 PHD_FILE: MSMg01no492_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:22 2005
         (614 letters)



>mm_chr5_74777059_74778072
          Length = 1014

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%)
 Strand = Plus / Minus

                                                                        
Query: 265  ctcacaggaagtttcctgttcctccagcatacagatttattaatattaagaattaacaat 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ctcacaggaagtttcctgttcctccagcatacagatttattaatattaagaattaacaat 955

                                                                        
Query: 325  gctcctgcatagttataactagctgtcttcctgctatgatatgtgaaagagcatgctttc 384
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 954  gctcctgcatagttataactggctgtcttcctgctatgatatgtgaaagagcatgctttc 895

                                                                        
Query: 385  cttaagcctcaccaatataccatactgttaagcttccaaagttttgtcaatctttggggt 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  cttaagcctcaccaatataccatactgttaagcttccaaagttttgtcaatctttggggt 835

                                                                        
Query: 445  gataaatgcaattttggtatcagatatcatttcaattttatactttttcttttaagtagg 504
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 834  gataaatgcaattttggtatcagatatcatttcaattttatactttttcttttatgtagg 775

                                                                        
Query: 505  tgaagttgaaggtattttcacatttcaatttaacttatcttattgtctatgattgcttgc 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  tgaagttgaaggtattttcacatttcaatttaacttatcttattgtctatgattgcttgc 715

                                                              
Query: 565  tttttgcttccccttttaaaaatatactattttattgtccttttaatcaa 614
            ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  tttttgctttcccttttaaaaatatactattttattgtccttttaatcaa 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no492_p20.g1 MSMg01no492_p20.g1 CHROMAT_FILE:
MSMg01no492_p20.g1 PHD_FILE: MSMg01no492_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:22 2005
         (508 letters)



>mm_chr5_74640544_74641450
          Length = 907

 Score =  913 bits (472), Expect = 0.0
 Identities = 499/508 (98%), Gaps = 1/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcacatgtgtcacctgtcacgctggcgccacgacaaagccagatctctttcatgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtcacatgtgtcacctgtcacgctggcgccacgacaaagccagatctctttcatgtcat 260

                                                                       
Query: 61  gttgacctggcccctttcccagtcacaaacctttctgtaagcaggaaaatgcttgcacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgacctggcccctttcccagtcacaaacctttctgtaagcaggaaaatgcttgcacaa 320

                                                                       
Query: 121 tattttatgcttactggctttgacatcgccacaggcagctggcacacaggcccctacaca 180
            | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtccatgcttactggctttgacatcgccacaggcagctggcacacaggcccctacaca 380

                                                                       
Query: 181 gccaaggattcaaaggagcagatctcacagtgagctgccctaagtggtggcttgttctta 240
           ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct: 381 gccaaggattcaaaggagcagatctcatagtgagctgccctaagtagtggcttgttttta 440

                                                                       
Query: 241 tgtcagtgagctaattctattgaattacaaatttgcggttcacactctttaatatatccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcagtgagctaattctattgaattacaaatttgcggttcacactctttaatatatccc 500

                                                                       
Query: 301 ctttcaacctgagtggacattttttggcgcctctgaagagcatcttgtggtttgctgtct 360
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttcaacctgagtggacatattt-ggcgcctctgaagagcatcttgtggtttgctgtct 559

                                                                       
Query: 361 ctcagcgctgactttgggagggtctctgcatctgtcaggtgcagggaactgggtgaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcagcgctgactttgggagggtctctgcatctgtcaggtgcagggaactgggtgaggcc 619

                                                                       
Query: 421 agaccttctccatgcagggtgacaattctgttggttttactttctgcaccacataaggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaccttctccatgcagggtgacaattctgttggttttactttctgcaccacataaggag 679

                                       
Query: 481 ctactatgcaaaggactcaccataccac 508
           ||||||||||||||||||||||||||||
Sbjct: 680 ctactatgcaaaggactcaccataccac 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space:   446706
Effective search space used:   446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)