BAC Information

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BAC

Clone NameMSMg01-493B14
Chromosome5 (Build37)
Map Location 120,360,911 - 120,361,252
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
Downstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493B14.T7 (MSMg01no493_b14.b1)MSMg01-493B14.TJ (MSMg01no493_b14.g1)
ACCAG570698AG570699
length724735
length of high quality
(start - end)		407 (49 - 455)591 (74 - 664)
definitionCHROMAT_FILE: MSMg01no493_b14.b1 PHD_FILE: MSMg01no493_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:31 2005CHROMAT_FILE: MSMg01no493_b14.g1 PHD_FILE: MSMg01no493_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGTGATTTTTCCAGAGTATGGGCTAATTTGCACACTCACCAG
CAGTGATTGTCTTCTTTCTCCTGCATCATTCTGTTCACTTTCTTCCTGAC
AACCATCCCTACTAGGGTAAGTCAGATTCTTCTTTTCTTTGTCCAGATTT
GATCTCTTGATAGGTATTATAATGATAAGTACTGGCCTCCAAGGTCTGGT
TGCTCCCAGGAATGAGAGAAACCACCTGTACCATATGACATTGCTCCTTC
ATTTAAAACTGATGGTTAAATAAAGGTGCCAACAGCCAATAGCTGGGCAG
AAGAGACATAGGTGGGGTTTGGAGTTCTCAGGCTTGGGGTCAGAGAAGGC
CAGGAGGAGAGAAAAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
ANNNNNNNNNNNNNNNNNNNNNNNNGGNNGGNGNGGGGGNGGGGGGGGGG
GGGGGGGGNGGGGGGGGGGGGNGGGGGGGGGCCGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGNGGGGGG
GGGGGGGGGGGGGGGGNGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGNGGGNGGGGN
GGGGGGGGGGGGGGGGGGGGNGGG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTACAGACCCAGGAAAGTCCACAAATA
GACAAAGAAGGTAAGAAGAAAGGACACAGTTGTGGGAACCACTACACATG
ACCTCAGATTATACCACAGAGCAATAGTGACAAAGTCAGATAGATACCAA
TGCAGAAACAGATGGTGAGACAGGTGTATCAGAACAGAGGATCTGGAAAT
AAATCAGCAATGCTGTAGTTACCCAATTTTGAACAAAGTTGGTGAAATAT
GCAGTAGAAAAGAAAAGATAGCCTGTTTAATAAATGCTGTACAAAAGAAA
GACATTAGATCCATATCTTTCACCTGACCAAAACCAACACAAAGCAGACC
AAAGACTTTAATTTGGAACCCAAGATGCTAGAACTACATGAGAAAAATTA
CCAGAGAATGCACTTTATATATTTAGGGGATGGGGAGATAGCTCAGTGGC
TAAGTGGTAGCACTGCTCTCGTAGAGGACCTGAGCACAGTTCCAGCACCC
ATGCTGCTAGGTGCAATCACCTGTAACTCTAGCTCCAAGAGATCCTACAC
TTCTGGTCTCCAAGGGCAGCTACATTCAAGGGCACAAATACACACATATA
CATAATTAAAAATAAAATAAAACTTTAAAGGATATATATTTATAAAGGTT
TAGACAACGTGTCTCTGAGCACACCCTCAGCATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_b14.b1 MSMg01no493_b14.b1 CHROMAT_FILE:
MSMg01no493_b14.b1 PHD_FILE: MSMg01no493_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:31 2005
         (407 letters)



>mm_chr5_120360911_120361718
          Length = 808

 Score =  638 bits (330), Expect = 0.0
 Identities = 339/342 (99%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgatt-tttccagagtatgggctaatttgcacactcaccagcagtgattgtc 63
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 342 gaattctgtgattatttccagagtatgggctaatttgcacactcaccagcagtgattggc 283

                                                                       
Query: 64  ttctttctcctgcatcattctgttcactttcttcctgacaaccatccctactagggtaag 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttctttctcctgcaccattctgttcactttcttcctgacaaccatccctactagggtaag 223

                                                                       
Query: 124 tcagattcttcttttctttgtccagatttgatctcttgataggtattataatgataagta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tcagattcttcttttctttgtccagatttgatctcttgataggtattataatgataagta 163

                                                                       
Query: 184 ctggcctccaaggtctggttgctcccaggaatgagagaaaccacctgtaccatatgacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ctggcctccaaggtctggttgctcccaggaatgagagaaaccacctgtaccatatgacat 103

                                                                       
Query: 244 tgctccttcatttaaaactgatggttaaataaaggtgccaacagccaatagctgggcaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgctccttcatttaaaactgatggttaaataaaggtgccaacagccaatagctgggcaga 43

                                                     
Query: 304 agagacataggtggggtttggagttctcaggcttggggtcag 345
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  agagacataggtggggtttggagttctcaggcttggggtcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 808
Length adjustment: 9
Effective length of query: 398
Effective length of database: 799
Effective search space:   318002
Effective search space used:   318002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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