BAC Information

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BAC

Clone NameMSMg01-493C20
Chromosome5 (Build37)
Map Location 87,828,876 - 87,829,248
singlet/doubletsinglet
Overlap geneLOC100039818
Upstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
Downstream geneUgt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493C20.T7 (MSMg01no493_c20.b1)MSMg01-493C20.TJ (MSMg01no493_c20.g1)
ACCAG570758AG570759
length735688
length of high quality
(start - end)		377 (45 - 421)---
definitionCHROMAT_FILE: MSMg01no493_c20.b1 PHD_FILE: MSMg01no493_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:37 2005CHROMAT_FILE: MSMg01no493_c20.g1 PHD_FILE: MSMg01no493_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTATTTATGCCTTCTCATTATGACAGTATTATTGGGATAGAGAC
ATACAATACCATATCTAAGGTCATGTAGATTAGAAACATTCAAACTGAGC
TGCTTATAATGCATTGAAAACATTTTATGCACTGAGCCATCTCTGATGGT
TAGATATAATTCATTAAATATAGCAAATATATGTTAAACATGCAGGATAT
ACTTCATTCTATGAGGTTTGCCAGGGAGTTCTGAAATTATTACCTTATTC
TGTGCCTTAATGGAACTGATTCAGATACTGATGAGTATACTACTCTCTGC
AAAACATTTTTTTACAGTCTATTGAAAACAAATTGAGAATCACAAGTGAT
ATGGCTATTGAAAAAAAAAACTTCAAAAATCTAAAACACTACTTTGTGAC
CTATGNTGGTTATGTAGTTCTTATGACAAGTTTTCAAAGACTTTTACTCC
TTAAAAAAACCAAAAAAATTTTTTTTTTCCTTCCCCGCACAAAAAAAAAA
AAAATTTCTCTCTCCCCCCCCCCCCCCCGTGGGGTGAGGAAGTTTTTTTT
CTCCCCCCCCCCCGCCGGGGGGGGGGGGGGGGGTTTTNTTTTTTTCTTTT
ATCTCTCCCCCCCTCCTNTTNACAAAAAAAAAAAAAAAAATTCTTTTTTT
TTTTTTTGTTTGTAAAACCAAAATAACAACTCTCT

AATGAAGGTGGGGGGAGGTAGGTTGGGGGGTATCAAGCCATAAGTGGATG
TGTGAGGGTTATTTTAGATTTCGATTGTGTCTGTAAAAGNTNGTTTTTTT
TTTTTTCTTTTNNTNNNNNNCGCGAAAGTNACTATTGGGGGTAAGGGCCC
TTGGGNGGGGNCCCGCCCCTGGGTTCGTTTCAGAAAAAATATGGAGGGGT
GGGAACACCTTAATTAGGAAAAGGGATATTTCCCCCGGGGAAATATTCCC
AAAATTGGGGGGGCAAATAATTTTTTATGGAAAACCCTAAGGGGGGTCCT
TTCCCAAAAAAAAAAAAATAAAGGGGTTTTGGGGAAAAAGCGCCTTAAAA
AGGGGGGCCCTATAAAGGGGGGAATCTTTTAAAAAAAACCGGGGGGGGAA
AAAAAAAAAAAAAAGGTTTTTCCCAGAAAAACATTTTTTTGTGGGGGGGG
GGGCCTTTTGGGGAAAAACCACCCTTTTTTTTTCCCCCCAAAAAAGGGGG
GGGGGGGGTGTTTTTCCTCCCCCCCCCCCCCTTTTTTTTATATAAGGGGG
GGGGGGGGGGGGGGGTCCCCCCCCCCCCGGGGTGTTTTTTTTGGGGGGGG
GGGGAGGGGTGGGAAAAAAAACCCCCCGCCTCTCCCCCTCTTTTTGAAAT
AAGAAAAAATAAACACCCCCACCCGCGGGGGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_c20.b1 MSMg01no493_c20.b1 CHROMAT_FILE:
MSMg01no493_c20.b1 PHD_FILE: MSMg01no493_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:37 2005
         (377 letters)



>mm_chr5_87828673_87829449
          Length = 777

 Score =  721 bits (373), Expect = 0.0
 Identities = 373/373 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcctatttatgccttctcattatgacagtattattgggatagagacatacaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcctatttatgccttctcattatgacagtattattgggatagagacatacaat 263

                                                                       
Query: 64  accatatctaaggtcatgtagattagaaacattcaaactgagctgcttataatgcattga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accatatctaaggtcatgtagattagaaacattcaaactgagctgcttataatgcattga 323

                                                                       
Query: 124 aaacattttatgcactgagccatctctgatggttagatataattcattaaatatagcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaacattttatgcactgagccatctctgatggttagatataattcattaaatatagcaaa 383

                                                                       
Query: 184 tatatgttaaacatgcaggatatacttcattctatgaggtttgccagggagttctgaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatatgttaaacatgcaggatatacttcattctatgaggtttgccagggagttctgaaat 443

                                                                       
Query: 244 tattaccttattctgtgccttaatggaactgattcagatactgatgagtatactactctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tattaccttattctgtgccttaatggaactgattcagatactgatgagtatactactctc 503

                                                                       
Query: 304 tgcaaaacatttttttacagtctattgaaaacaaattgagaatcacaagtgatatggcta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcaaaacatttttttacagtctattgaaaacaaattgagaatcacaagtgatatggcta 563

                        
Query: 364 ttgaaaaaaaaaa 376
           |||||||||||||
Sbjct: 564 ttgaaaaaaaaaa 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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