Query= MSMg01no493_f22.b1 MSMg01no493_f22.b1 CHROMAT_FILE:
MSMg01no493_f22.b1 PHD_FILE: MSMg01no493_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:52 2005
(556 letters)
>mm_chr5_5224751_5225706
Length = 956
Score = 1050 bits (543), Expect = 0.0
Identities = 549/551 (99%)
Strand = Plus / Plus
Query: 5 gaattcagggaatggggaaggaggtacttctctgtgtgacactatatactatgtaacgcc 64
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcggggaatggggaaggaggtacttctctgtgtgacactatatactatgtaacgcc 264
Query: 65 caagtagacaagtagaaagaaagaaaataatagcggagggtcttaaactaaagtatttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caagtagacaagtagaaagaaagaaaataatagcggagggtcttaaactaaagtatttag 324
Query: 125 gaaagattgaataaatatttatcaaaaggatgtcaagaatgataatatgcttgagtgtag 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 gaaagattgaataaatatttatcaaaaggatgtcaaggatgataatatgcttgagtgtag 384
Query: 185 atcagttaaactttttctaaaacctagatgtccctcggcagaaaagaatggagaaagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcagttaaactttttctaaaacctagatgtccctcggcagaaaagaatggagaaagaaa 444
Query: 245 atatgctatatttatacaatggattattactcagcagttttgttttgtttatttagaagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatgctatatttatacaatggattattactcagcagttttgttttgtttatttagaagg 504
Query: 305 acatcaggaaagttgcaggcaaatggatggaagtagaaaacagtcattctgagtaaggta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acatcaggaaagttgcaggcaaatggatggaagtagaaaacagtcattctgagtaaggta 564
Query: 365 acccagacccagaatgagaaatttggtgtgcatttgcttacatatgtataatagccatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccagacccagaatgagaaatttggtgtgcatttgcttacatatgtataatagccatta 624
Query: 425 actgaatgataaccaagctacaagccatagacccagggtctagggtgcacacatggattt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actgaatgataaccaagctacaagccatagacccagggtctagggtgcacacatggattt 684
Query: 485 ccctgagagggagaaatagaatagactttacaagtgcactcagagacatggggcctagaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccctgagagggagaaatagaatagactttacaagtgcactcagagacatggggcctagaa 744
Query: 545 caggagtagta 555
|||||||||||
Sbjct: 745 caggagtagta 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_f22.g1 MSMg01no493_f22.g1 CHROMAT_FILE:
MSMg01no493_f22.g1 PHD_FILE: MSMg01no493_f22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:52 2005
(523 letters)
>mm_chr5_5370159_5371081
Length = 923
Score = 710 bits (367), Expect = 0.0
Identities = 425/457 (92%), Gaps = 24/457 (5%)
Strand = Plus / Minus
Query: 1 acttgagactggaatcttgcagcttgagggctgggtcagtttagctatgcagcaaggtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acttgagactggaatcttgcagcttgagggctgggtcagtttagctatgcagcaaggtgt 391
Query: 61 ggcagctctctccttcctccagtttatgagctttgggctccttatctcagggacctgccg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 390 ggcagctctctccttcctccagtttatgagctttgggctccttatcacagggacctgccg 331
Query: 121 ggagaggcctgcactggagtgtgggtgcaactcccattggcttgaggatctctctcaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggagaggcctgcactggagtgtgggtgcaactcccattggcttgaggatctctctcaggt 271
Query: 181 gggc-ataagggtttgacctcgaacagaaatgtgttagttatttactctttgactgtaat 239
| || | |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 270 gtgcga-aagggtttgacctcgaacagaaatttgttagttatttactctttgactgtaat 212
Query: 240 gctctgctgattgtgtgtgtgtgtgtgt----------------ctgtccatccgtgtgt 283
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 211 gctctgctgattgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtctgtccat----gtgt 156
Query: 284 gtgtgtgactgtgtgtgtgtgtgtgtgtttacgtgtgaccagtttgaagttaagtgttga 343
|||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||
Sbjct: 155 gtgtgtgactgtgtgtctgtgtgtat--ttacatgtgaccagtttgaagttaagtgttga 98
Query: 344 agccttcagatatttacagtgatagatagtgaatgttgctaaattccctcatggttggat 403
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 97 agccttcagatatttacagtgataggtagtgaatgttgctaaatcccctcatggttggat 38
Query: 404 acagggaatgtaaggaccattcgcagccctgcactca 440
|||||||||||||||||||||||||||||||||||||
Sbjct: 37 acagggaatgtaaggaccattcgcagccctgcactca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
