Query= MSMg01no493_n02.b1 MSMg01no493_n02.b1 CHROMAT_FILE:
MSMg01no493_n02.b1 PHD_FILE: MSMg01no493_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:30 2005
(700 letters)
>mm_chr5_101321443_101322544
Length = 1102
Score = 897 bits (464), Expect = 0.0
Identities = 517/550 (94%), Gaps = 29/550 (5%)
Strand = Plus / Minus
Query: 5 gaattcacttcacttgatagaatttttcacaagaactaagccaa-tcataataatgtcta 63
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 528 gaattcacttcacttgatagaatttttcacaagaactaagccaattc----taatgtct- 474
Query: 64 ttagtgccaatatggctttgctaaagag----cccagagtgctacac--agagagctctt 117
|||||||||||| ||||||||||||||| |||||||||||
Sbjct: 473 ----------------tttgctaaagagcccacccagagtgctacacagagagagctctt 430
Query: 118 tacatggttctgaaacatgtgactccacacttaactagaaagccaaagaaagcagagatc 177
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 429 tacatggttctgaaacatgtgactccacacttaactagaaatccaaagaaagcagagatc 370
Query: 178 aatcagattagcccacccctgtgtccttatacaacctccatgtagtcatgctgtctgtcg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatcagattagcccacccctgtgtccttatacaacctccatgtagtcatgctgtctgtcg 310
Query: 238 gtccatctaccctatcagctatctgtctttctatatctatgcatctacctgtctacctat 297
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 309 gtccatctaccctatcagctatctgtctttctatatccatgcatctacctgtctacctat 250
Query: 298 ctctgtatctaagtcccaacctaccatctccgcatctacatatatcatctatcacctatc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctctgtatctaagtcccaacctaccatctccgcatctacatatatcatctatcacctatc 190
Query: 358 tatgcatgtatctagcatctgtctatcaattttcaattatatatctagattgagcacaaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tatgcatgtatctagcatctgtctatcaattttcaattatatatctagattgagcacaaa 130
Query: 418 atgtacccatacaaagagccaaaggagggaaatacacaagtgtttttcattcctgcaagt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atgtacccatacaaagagccaaaggagggaaatacacaagtgtttttcattcctgcaagt 70
Query: 478 tttaaatttgtaacaatatcaaataaataaagttataaacttaacactcaaatgctcccc 537
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 69 tttaaatttgtaacgatatcaaataaagaaagttataaacttaacactcaaatgct-ccc 11
Query: 538 cccctcacca 547
||||||||||
Sbjct: 10 cccctcacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1102
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1092
Effective search space: 753480
Effective search space used: 753480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_n02.g1 MSMg01no493_n02.g1 CHROMAT_FILE:
MSMg01no493_n02.g1 PHD_FILE: MSMg01no493_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:30 2005
(649 letters)
>mm_chr5_101150920_101151967
Length = 1048
Score = 1060 bits (548), Expect = 0.0
Identities = 610/650 (93%), Gaps = 33/650 (5%)
Strand = Plus / Plus
Query: 1 aacactatcatcttattggttctttttgactttgcagaatcagggtttgctcagccgacc 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aacactatcatcttattgattctttttgactttgcagaatcagggtttgctcagccaacc 260
Query: 61 ttgaacttgtagtgattttcctccctgtgctgagattactgaagcctgcccatcaaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaacttgtagtgattttcctccctgtgctgagattactgaagcctgcccatcaaatgt 320
Query: 121 gccgggcaggtgggagtgcagggcctgggagagagcagtctcacctgatagtgtatttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccgggcaggtgggagtgcagggcctgggagagagcagtctcacctgatagtgtatttag 380
Query: 181 tctgggctctctactaaaagttctgcacttttggctcatggtcagctagctttgggtaga 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgg-ctctctactaaaagttctgcacttttggctcatggtcagctagctttgggtaga 439
Query: 241 cgtgagtgataaactgaatgttcagggtcctgggtttgattcctggtagctggagggtac 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 cgtgagtgataaactgaatgttcagggtcctgggtttgattcttggtagctggagggtac 499
Query: 301 acacacacacacacacacacacacacacacacacacacacacaaagggaggaaggaaggg 360
||||||||||||| |||||||||||||||||
Sbjct: 500 acacacacacaca------------------------------aagggaggaaggaaggg 529
Query: 361 aaggaaagaagtaaggaatgaagggataaggggaatgagaaatatactttgaagatgggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aaggaaagaagtaaggaatgaagggataaggggaatgagaaatatactttgaagatgggc 589
Query: 421 aaaaagatgtcctggttcgtttgtttcaaattctgagttacttgaggagggagacctgtg 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 590 aaaaagatgtcctggttcgtttgtttcaaattctgaattacttgaggagggaggcctgtg 649
Query: 481 ccctgaacagtccacatgatggaactcacttagcctgtgtctcagttatagtttctgttg 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ccctgagcagtccacatgatggaactcacttagcctgtgtctcagttatagtttctgttg 709
Query: 541 ctgtgacaaaactgcataactaaaaaagccggttggggaggaaagggtttatttggctta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctgtgacaaaactgcataactaaaaaagccggttggggaggaaagggtttatttggctta 769
Query: 601 ta-tgtcaccaaaggaattcagggcatgaactcaagtaaggcaggagcct 649
|| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 770 tact-tcaccaaaggaattcagggcatgaactcaagtagggcaggagcct 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1048
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1038
Effective search space: 663282
Effective search space used: 663282
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
