BAC Information

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BAC

Clone NameMSMg01-494C11
Chromosome5 (Build37)
Map Location 39,392,901 - 39,537,734
singlet/doubletdoublet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494C11.T7 (MSMg01no494_c11.b1)MSMg01-494C11.TJ (MSMg01no494_c11.g1)
ACCAG571501AG571502
length722726
length of high quality
(start - end)
593 (60 - 652)371 (57 - 427)
definitionCHROMAT_FILE: MSMg01no494_c11.b1 PHD_FILE: MSMg01no494_c11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:55 2005CHROMAT_FILE: MSMg01no494_c11.g1 PHD_FILE: MSMg01no494_c11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,537,142 - 39,537,734)(39,392,901 - 39,393,260)
sequence
GCGGCCGCAAAACGACTCACATTCTAAAGAGGATCCGCGGAATTCAGGAT
ATCTTAATACTGAAAACACCTTCAGATTTGAAACCCTCTGGTTTTATTGT
CCCTGCTTTCCTTGTCAAATGGATTGATTATCAATGAGTTGATATTCACT
AAAATGGTAAGCAACTGTAACTTCACCTGTAGAAATACTCAAACGTGGGA
AGTCTTCGGCACAGTGCCTGACCAGCCCCACTCTCTTCACTCTGTTCTCT
CTTGTCCCCAGCCCAGATATTGCTTGCTTGGACTGACCTCAGACCTCCAC
CTTTTTTATGACTTTAGTCATTGGAATCTTCTCAAATCCAGGAAGAACAC
GGTAGTGCAGAGATATTGGGAACCACAGACAGAAAGACATTTAGCACATG
CATTTGCCGACACTCATTCCTTATGGCCTAGAGAGCATTTCTGTGTGGAG
AGTTTCATCCTTCTAGAGAAACCATTTTTCACTGAGAGTATGGTGTAGGG
TAGGGTCAGAGTATCCTGGGCTCTTATCCATCCCTGCTTCAGGAAGTCCA
CTCTGCTGTTAACTCCTTTCCTTTGTTATTCCTTGGACTTCTTTGCAATG
TAATTTGAGCAGTGGTTTAAGGAGTTAAGCATCTGAAAACTCAGCCCTGG
AGAATGTTGCCACAGACACAGTCCTTCTGACAAACACTGGCAGCAGCTAC
CAGGATTATTGCATTGTTAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTT
TTCTCCGCGGAATTCTCTAAGCCTGGTCTTGCGAGTGCTATCCTCAATTG
TGGAAGCAGTTGGCTGATACTAGATACAGAATTATTTCACTGTGAGATTC
AGAGAAGGGTTAATGCATCAGAGTGGTCACTGCATATGGCCAGGACCAGG
GGCTTTAGAGTTTCTATCTGATGAGACTTCTTAGAAATCTGAAATTGGTC
AGTCGGGAGGAAATTCAGTGGGCAACAGTGGACATTCAAGAGCTGGTAGA
ATAGTTTCCTCTGGGTCTTTGATGGATGTGGTGGACTTCTTCAGGATATA
GTTACCAGTCTACACATGAATTCAATTTATGTCTCTGCCCCAAGTGAATG
AACTGCCCATATCATTTTTAAATTTCCTTTCTGTTGAAAAATTGTGTTTG
GATATATCTAAGGCTCTGAAGCATGTATACACTGTGGAATAGTTAAATCT
AGCTAATGAACATATGGACCATCTCAAGTGGTGCTCATTCTGAGAGAATA
GGTAACAGCAATCGTGACAATCTCAAGAATTAAATATCACATCCCTAATG
GCATGTACCACTCTGTGTGTTAGCTGCCCACATTTCTCTTATGGAACTGT
AATTCCCTATCTGTCGACCTATATGTTTGCCTTTTCTCATCTTAGTACCC
ACCCTAGGCATTCTACTCTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_c11.b1 MSMg01no494_c11.b1 CHROMAT_FILE:
MSMg01no494_c11.b1 PHD_FILE: MSMg01no494_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:55 2005
         (593 letters)



>mm_chr5_39536942_39537934
          Length = 993

 Score = 1116 bits (577), Expect = 0.0
 Identities = 589/593 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaaaacaccttcagatttgaaaccctctggttttattgtccctgctttccttgtcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctgaaaacaccttcagatttgaaaccctctggttttattgtccctgctttccttgtcaaa 734

                                                                       
Query: 61  tggattgattatcaatgagttgatattcactaaaatggtaagcaactgtaacttcacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tggattgattatcaatgagttgatattcactaaaatggtaagcaactgtaacttcacctg 674

                                                                       
Query: 121 tagaaatactcaaacgtgggaagtcttcggcacagtgcctgaccagccccactctcttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tagaaatactcaaacgtgggaagtcttcggcacagtgcctgaccagccccactctcttca 614

                                                                       
Query: 181 ctctgttctctcttgtccccagcccagatattgcttgcttggactgacctcagacctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctctgttctctcttgtccccagcccagatattgcttgcttggactgacctcagacctcca 554

                                                                       
Query: 241 ccttttttatgactttagtcattggaatcttctcaaatccaggaagaacacggtagtgca 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cctcccttatgactttagtcattggaatcttctcaaatccaggaagaacacggtagtgca 494

                                                                       
Query: 301 gagatattgggaaccacagacagaaagacatttagcacatgcatttgccgacactcattc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gacatattgggaaccacagacagaaagacatttagcacatgcatttgccgacactcattc 434

                                                                       
Query: 361 cttatggcctagagagcatttctgtgtggagagtttcatccttctagagaaaccattttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttatggcctagagagcatttctgtgtggagagtttcatccttctagagaaaccattttt 374

                                                                       
Query: 421 cactgagagtatggtgtagggtagggtcagagtatcctgggctcttatccatccctgctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cactgagagtatggtgtagggtagggtcagagtatcctgggctcttatccatccctgctt 314

                                                                       
Query: 481 caggaagtccactctgctgttaactcctttcctttgttattccttggacttctttgcaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caggaagtccactctgctgttaactcctttcctttgttattccttggacttctttgcaat 254

                                                                
Query: 541 gtaatttgagcagtggtttaaggagttaagcatctgaaaactcagccctggag 593
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtaatttgagcagtggtttaaggagttaagcatctgaaaactcagccctggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space:   573089
Effective search space used:   573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no494_c11.g1 MSMg01no494_c11.g1 CHROMAT_FILE:
MSMg01no494_c11.g1 PHD_FILE: MSMg01no494_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:56 2005
         (371 letters)



>mm_chr5_39392698_39393468
          Length = 771

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctctaagcctggtcttgcgagtgctatcctcaattgtggaagcagttggctgata 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctaagcctggtcttgcgagtgctatcctcaattgtggaagcagttggctgata 263

                                                                       
Query: 64  ctagatacagaattatttcactgtgagattcagagaagggttaatgcatcagagtggtca 123
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 ctagatacagaattatttcactgtgagattcagagaagggttaaggcatcagagtggtca 323

                                                                       
Query: 124 ctgcatatggccaggaccaggggctttagagtttctatctgatgagacttcttagaaatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgcatatggccaggaccaggggctttagagtttctatctgatgagacttcttagaaatc 383

                                                                       
Query: 184 tgaaattggtcagtcgggaggaaattcagtgggcaacagtggacattcaagagctggtag 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 384 tgaaattggtcagtcgggaggaaattcagtgggcagcagtggacattcaagagctggtag 443

                                                                       
Query: 244 aatagtttcctctgggtctttgatggatgtggtggacttcttcaggatatagttaccagt 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 aatagtttcctctgggtctttgatggatgtggtggatttcttcaggatatagttaccagt 503

                                                                       
Query: 304 ctacacatgaattcaatttatgtctctgccccaagtgaatgaactgcccatatcattttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctacacatgaattcaatttatgtctctgccccaagtgaatgaactgcccatatcattttt 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)