BAC Information

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BAC

Clone NameMSMg01-494L08
Chromosome5 (Build37)
Map Location 53,744,731 - 53,745,096
singlet/doubletsinglet
Overlap genenone
Upstream geneSod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik
Downstream geneLOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494L08.T7 (MSMg01no494_l08.b1)MSMg01-494L08.TJ (MSMg01no494_l08.g1)
ACCAG571924AG571925
length728781
length of high quality
(start - end)
183 (62 - 244)407 (67 - 473)
definitionCHROMAT_FILE: MSMg01no494_l08.b1 PHD_FILE: MSMg01no494_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:36 2005CHROMAT_FILE: MSMg01no494_l08.g1 PHD_FILE: MSMg01no494_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTT
AATCTCTTGCAACACTATGGAAGAGAAGGGCTTCCTTTTCTTTTTTTTAT
CTTTTCAAAGTCTCAACCTCGATGGACTAGGGTAGATGACGTGTTCTCTC
TCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTCATTTTCCCTCCC
TACCCCTCCCTCTCTCCTTCCTTTTTATCAAGAGAGACCACTAAGTTAGT
AACTGTAATTGCAGAACAGACCCTGTTTTTCTGGACCTTGGAAAGACTGG
AATGTTCTTTCTCTCCTGAGAGTGCTTGGTGCTGAGTGGACGAGCATCTT
TATTCTGAATCAGTCTGCTTGAGGTCCCATCTCTCTGCAACTCTATTGGT
GCTCACCACAGGCTAGAGGTGCTCCGTATTAGATGCTGTCTGGAACCCTC
GTCCCCCCCCCTCTTTTAACATTATAATAACAGTGTCTATTTATAGTGTT
GCTGTTATGGGTTGACTGGATTATTGGTTGAATGGCTTAACGCTTCAAAT
TGTTGTTTATTTCAGAGTGCTTGGGATATTCCCGCCTGCGTACTTCTGGT
CGAACATCCAGATTGACGGAACTTTCGAATCCCCAATCCTCTGATATCAG
ATATGTCTCGAATATCTAGTTTTGCTCTTAAACCTTATGTGGCACTCTTA
CATTGCATTTATGTTTTTACATTTGTGG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAAAAACCCTATC
TGGAAAAACCAAAAGCCAAAAACCAAAAAACAAAAAAACAAAACAAACAA
ACAAACAAAAAAACCAACCAAACCAAAAAAAACCAAAACAACAAAAAACG
AACAAACAAAAAACAAAGAAACAAAAAAATTTATAATGGTTTATTTCTGA
AAATATCCCTTCATGCTTTTGGACGACTATTGGCTGTGTCCAGCTTGCTA
CGCTGTTGTGAGCCATTTCCACCACTCAGCCCATTTTGGGCTTCTCTAGC
AGACATCAGACTATTGCTTAAACTCTGGTCCTTAGAACCCATGTAAGTAG
AAGGATAATGGCACTTAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTATCTTTTTATCTCTCACACTATGCTTTATTA
GCGTATACCCTAATTACTTTATTCTTTCCGAGTTTTAATACCTTTGTTTT
TTATTGTAGTATTTTATTATCACTAGATGGGATCCCTTTGATAATATAGT
ATATTCCGTGGCGCTTTTTTGGTACTGTTTTTTAGTCGCTTCACTTTCTC
TTGCTCTTTTTCATCCCAAACCTTTTTTTTTCCTGCTCTTTTGTTTTCCA
AGCGTTTATTTCCTCTCATTTTTTTTCCATATTTATCCTGTGATCATTAC
GCTCTATTTTGTTATTTATCGGTGTTATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_l08.g1 MSMg01no494_l08.g1 CHROMAT_FILE:
MSMg01no494_l08.g1 PHD_FILE: MSMg01no494_l08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:37 2005
         (407 letters)



>mm_chr5_53744385_53745191
          Length = 807

 Score =  569 bits (294), Expect = e-166
 Identities = 350/376 (93%), Gaps = 16/376 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctatacagaaaaaccctatctggaaaaaccaaaagccaaaaaccaa 60
           |||||||||||||||||||||||||||||        |||| ||||||  |||||| |||
Sbjct: 712 caggacagccagggctatacagaaaaacc--------aaaagccaaaaatcaaaaaacaa 661

                                                                       
Query: 61  aaaacaaaaaaacaaaacaaacaaacaaacaaaaaaaccaaccaaa-----ccaaaaaaa 115
           ||||||||||||||||||||||||||||| |||||| |||||||||     |||||||||
Sbjct: 660 aaaacaaaaaaacaaaacaaacaaacaaa-aaaaaacccaaccaaacccccccaaaaaaa 602

                                                                       
Query: 116 -accaaaacaacaaaaaacgaacaaacaaaaaacaaagaaacaaaaaaatttataatggt 174
            | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 caacaaaa-aaaaaaaaacgaacaaacaaaaaacaaagaaacaaaaaaatttataatggt 543

                                                                       
Query: 175 ttatttctgaaaatatcccttcatgcttttggacgactattggctgtgtccagcttgcta 234
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 542 ttatttctgaaaatatcccttcacgcttttggaccactattggctgtgtccagcttgcta 483

                                                                       
Query: 235 cgctgttgtgagccatttccaccactcagcccattttgggcttctctagcagacatcaga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cgctgttgtgagccatttccaccactcagcccattttgggcttctctagcagacatcaga 423

                                                                       
Query: 295 ctattgcttaaactctggtccttagaacccatgtaagtagaaggataatggcacttaaac 354
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 422 ctattgcttaaactctggtccttagaacccatgtaagtagaagtataatggcacttaaac 363

                           
Query: 355 tctctctctctctctc 370
           ||||||||||||||||
Sbjct: 362 tctctctctctctctc 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)