BAC Information

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BAC

Clone NameMSMg01-495I23
Chromosome5 (Build37)
Map Location 23,145,061 - 23,328,840
singlet/doubletdoublet
Overlap genePus7, Rint1
Upstream geneLOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2
Downstream gene4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495I23.T7 (MSMg01no495_i23.b1)MSMg01-495I23.TJ (MSMg01no495_i23.g1)
ACCAG572575AG572576
length692744
length of high quality
(start - end)		506 (63 - 568)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no495_i23.b1 PHD_FILE: MSMg01no495_i23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:39 2005CHROMAT_FILE: MSMg01no495_i23.g1 PHD_FILE: MSMg01no495_i23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,328,339 - 23,328,840)(23,145,061 - 23,145,641)
sequence
NNGGGCGCGGNNTNNNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCGAAGATCCGCGGAATTCCGCCCATATCTCGCAGGTTTTCATGGCT
CTGGGCATCAGATTCAGCTTCTCACCTCTGCACAGCAAGCACTTTACTGC
TGAGCCATCTCTCCACTCCCCACACCTACTACCCTTTGGGTGGAATGTTT
CATTCCCTTTAACTGCCTGCCATTGGGAAGAGAAGGCAGGGAAGGCCCAC
CCAGGCAAGGGGAGGTGTGATGATGGAGGTAGAGAAAGTTCATGCTTTCC
TCACTGGGAAACCTGTCAGTGTGGGGCATGTTAGAACACTCCTCTCATCC
CAGCACTCAGGAGGTAGAAGCAGGCAGGGCTATGTAGTGACCCTGCCTAA
AAAAAAGGAAACCTTACCAACCCTCACACAGGTGAGGAGACCCCGTCTGC
TAGAATTACTAAAACTCTAAGCTCCACAGTAGTTGGAAAGCCGCCATATA
GAACATCGAGGCGGCTGGTGAGGAGGTGCAAGTGTTTCCTCTGCAAGCCA
GGCAGGGCACGCAGAGCCTGCCAGGAGCCTGGGGACCCACATAAAGGTGG
GAGAACTGCTGACGACACAGCATGCTCTGCTTCTGTCCACGTGCACGCTG
GCTGGCGCGCTCTCTCTCTCACATACACACACAGTCACAATG

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGGATGTGGAAGAGCAAAGTTC
AGTCATATCTGGTCCACACAGTCACATATCTGGTCCACACAGTCACATAT
CTGGTCCACACAGTCACATATCTGGTCCACACAGTCACATATCTGGTCCA
CACAGCCACATATCTGGTCCACACAACCACATATCTGGTCCACACAGCCA
CATATCTGGTCCACACAGCCACATATCTGGTCCACACAGCCACATATCTG
GTCCACACAGCCACATATCTGGTCCACACAGCCACATATCTGGTCCACAC
AGTCACATATCTGGTTCACACAGCCACATATCTGGTCCACACAGTCACAT
ATCTGGTTCACACAGTCACAACAGTAAAATGATGAAGCAAAGCATCCTCC
ACAATAACGAACGGAGGGCTCTGGACCAGGACACACAGGGCTGATTTACG
TGGCCCCACCCTCCAGTAATGCTTGCATTAAGGGAAGCTGTCATCAACCT
ACTTGCAAACCCCAACATTCCATTTCTCAGAAAGTAAATTTACTTGAGAC
TGATCTAGTCCAATTCCAATAAATTCTAGAATACAATGAAAACTATAAAC
AAATTTGTAAAATAATCACTTCAAGCCACAAGCAAGAGGCATCCTTCAAA
AATGAAATACAACATAGAGAAACCTTTACGCATGAATCAAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_i23.b1 MSMg01no495_i23.b1 CHROMAT_FILE:
MSMg01no495_i23.b1 PHD_FILE: MSMg01no495_i23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:39 2005
         (506 letters)



>mm_chr5_23328276_23329181
          Length = 906

 Score =  948 bits (490), Expect = 0.0
 Identities = 499/502 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccgcccatatctcgcaggttttcatggctctgggcatcagattcagcttctcacc 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaattccgcccagagctcgcaggttttcatggctctgggcatcagattcagcttctcacc 506

                                                                       
Query: 65  tctgcacagcaagcactttactgctgagccatctctccactccccacacctactaccctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgcacagcaagcactttactgctgagccatctctccactccccacacctactaccctt 446

                                                                       
Query: 125 tgggtggaatgtttcattccctttaactgcctgccattgggaagagaaggcagggaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggtggaatgtttcattccctttaactgcctgccattgggaagagaaggcagggaaggc 386

                                                                       
Query: 185 ccacccaggcaaggggaggtgtgatgatggaggtagagaaagttcatgctttcctcactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacccaggcaaggggaggtgtgatgatggaggtagagaaagttcatgctttcctcactg 326

                                                                       
Query: 245 ggaaacctgtcagtgtggggcatgttagaacactcctctcatcccagcactcaggaggta 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ggaaacctgtcagtgtggggcatgttagaacacacctctcatcccagcactcaggaggta 266

                                                                       
Query: 305 gaagcaggcagggctatgtagtgaccctgcctaaaaaaaaggaaaccttaccaaccctca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagcaggcagggctatgtagtgaccctgcctaaaaaaaaggaaaccttaccaaccctca 206

                                                                       
Query: 365 cacaggtgaggagaccccgtctgctagaattactaaaactctaagctccacagtagttgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cacaggtgaggagaccccgtctgctagaattactaaaactctaagctccacagtagttgg 146

                                                                       
Query: 425 aaagccgccatatagaacatcgaggcggctggtgaggaggtgcaagtgtttcctctgcaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aaagccgccatatagaacatcgaggcggctggtgaggaggtgcaagtgtttcctctgcaa 86

                                 
Query: 485 gccaggcagggcacgcagagcc 506
           ||||||||||||||||||||||
Sbjct: 85  gccaggcagggcacgcagagcc 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no495_i23.g1 MSMg01no495_i23.g1 CHROMAT_FILE:
MSMg01no495_i23.g1 PHD_FILE: MSMg01no495_i23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:39 2005
         (581 letters)



>mm_chr5_23144861_23145841
          Length = 981

 Score = 1123 bits (581), Expect = 0.0
 Identities = 581/581 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctggatgtggaagagcaaagttcagtcatatctggtccacacagtcacatatctggtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctggatgtggaagagcaaagttcagtcatatctggtccacacagtcacatatctggtcc 260

                                                                       
Query: 61  acacagtcacatatctggtccacacagtcacatatctggtccacacagtcacatatctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacagtcacatatctggtccacacagtcacatatctggtccacacagtcacatatctgg 320

                                                                       
Query: 121 tccacacagccacatatctggtccacacaaccacatatctggtccacacagccacatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacacagccacatatctggtccacacaaccacatatctggtccacacagccacatatc 380

                                                                       
Query: 181 tggtccacacagccacatatctggtccacacagccacatatctggtccacacagccacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtccacacagccacatatctggtccacacagccacatatctggtccacacagccacat 440

                                                                       
Query: 241 atctggtccacacagccacatatctggtccacacagtcacatatctggttcacacagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctggtccacacagccacatatctggtccacacagtcacatatctggttcacacagcca 500

                                                                       
Query: 301 catatctggtccacacagtcacatatctggttcacacagtcacaacagtaaaatgatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatctggtccacacagtcacatatctggttcacacagtcacaacagtaaaatgatgaa 560

                                                                       
Query: 361 gcaaagcatcctccacaataacgaacggagggctctggaccaggacacacagggctgatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaagcatcctccacaataacgaacggagggctctggaccaggacacacagggctgatt 620

                                                                       
Query: 421 tacgtggccccaccctccagtaatgcttgcattaagggaagctgtcatcaacctacttgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacgtggccccaccctccagtaatgcttgcattaagggaagctgtcatcaacctacttgc 680

                                                                       
Query: 481 aaaccccaacattccatttctcagaaagtaaatttacttgagactgatctagtccaattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaccccaacattccatttctcagaaagtaaatttacttgagactgatctagtccaattc 740

                                                    
Query: 541 caataaattctagaatacaatgaaaactataaacaaatttg 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caataaattctagaatacaatgaaaactataaacaaatttg 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 185
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 5
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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