BAC Information

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BAC

Clone NameMSMg01-495J12
Chromosome5 (Build37)
Map Location 12,432,276 - 12,432,672
singlet/doubletsinglet
Overlap geneSema3d
Upstream geneLOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059
Downstream geneLOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717, Sema3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495J12.T7 (MSMg01no495_j12.b1)MSMg01-495J12.TJ (MSMg01no495_j12.g1)
ACCAG572601AG572602
length749731
length of high quality
(start - end)
341 (330 - 670)398 (334 - 731)
definitionCHROMAT_FILE: MSMg01no495_j12.b1 PHD_FILE: MSMg01no495_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:41 2005CHROMAT_FILE: MSMg01no495_j12.g1 PHD_FILE: MSMg01no495_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAGACCGAGCC
GCGGAATTCTACCAATCCTTCAACAAGAGCTAATATCAACATTCCTCAAG
TTATTCCACAAAATAGGAACAGAGGAAACAAAGTTAAATTTATTTTATGA
GGCAACAGTCATGCTGATACACAAACCACACAAAGATTCAACAAAGAAAG
AGAATTACAGATCAATTTCTGTTATGGAAGTTGACACAAAAATACTGAAT
AAAATACTTGCAAACTTAATTCAAGAACATCTTTCTCTAACAGATTATAA
AGTGTAAAACAACAATATCACTTTTTTCTCATACACAGATGCAGGAAGTG
CTGCCTGGTGGTGGGCTCTGACTCAAGTCATATTAGACATAGCAGTTCAT
ATTGACCTTTTATTTGATTGGTCTTTATGTAAAGCTTTGTGGAATTTCTT
AAGATTAACAAACCTCATCCAAAACAAAATATGATATGTGTTCAGCATGA
CCTTGCTCTGCATCAAGTTTTTTTTTTTTTTCTGTCAATGACTGGCAGGG
ATATTACAGCAACAATATCAAATAGTTGGCTGGTATGGAACAAAATGGCT
ACAGCTATACTGGGGTGGGGCAGACCTCAACAGGGAACACTCCTTCCTTC
ATAGGAGCTAGAAGTACAAATGTGTGCATCCACTTTGGAAATCTTTTCTA
AGAAAATTGGGAATTGATTTACCTCAAAACCCAGCTATACCATCTTACC
AAAAANCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCCTCCACCCAGTTCAGTCATCTATGATG
ATTGGTATGCATAGGTTCTAATTCTAATGTACGTGGGTTGCTGAGATGGT
TCAAAGGCTAACACACTTGCCACCAAATCAGATGACTGGAGTTATATCCC
TGAGAACCACAAGGTAGAAGGAGAGAACTAACTTCTGCAAGCACTCCTCT
CACTCTACATATGTATGCTGGCACATGTGGGATCACACACACACACACAC
ACACACACACACACACACACACTTTTTTTTTTACAGAGAGAGAGAGAGAG
AGAGAGAGAACATTATTTAATAAATAAAGAATATGTCTGTATTGGAGATT
ATAATATTTCCAAAAGTAAAAAAATAACACTTGGGAAAGGGAGAATCTTT
TGGAAAGATATTTCAAACTGATTTTGAAATCTCTGTGTTTTCTATAAACC
GAGAACACTGTAGAACAGTTATAATTAAAACTGAAGTTATAAATTTGTAT
CCATCTCTTCCACCATTGTCCTGTCCAAATAACCTCCAGAAGCACCTTCA
GGCTGGCTTCCTGCTACACCAGCTTCTAAATGTTATGAGCACTAAAGCTT
TTCCTAAGACACTTTGTTCAAAAATATTTAGTAACTCTAAGTTAAACATA
TTTTAAATATTTCTTTTGCCTTTGCCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_j12.g1 MSMg01no495_j12.g1 CHROMAT_FILE:
MSMg01no495_j12.g1 PHD_FILE: MSMg01no495_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:42 2005
         (398 letters)



>mm_chr5_12432076_12432872
          Length = 797

 Score =  677 bits (350), Expect = 0.0
 Identities = 386/398 (96%), Gaps = 1/398 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagagagagagagagagagagagaacattatttaataaataaagaatatgtctgtatt 60
           |||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||
Sbjct: 201 cagagagagagagagagacagagagaatgttatttaagaaataaagaatatgtctgtatt 260

                                                                       
Query: 61  ggagattataatatttccaaaagtaaaaaaataacacttgggaaagggagaatcttttgg 120
           |||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||
Sbjct: 261 ggagattataatatttccaaaagt-aaaaaataaaatttgggaaagggagactcttttgg 319

                                                                       
Query: 121 aaagatatttcaaactgattttgaaatctctgtgttttctataaaccgagaacactgtag 180
           |||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 320 aaagatatttaaaactgattttgaaatctcagtgttttctataaaccgaaaacactgtag 379

                                                                       
Query: 181 aacagttataattaaaactgaagttataaatttgtatccatctcttccaccattgtcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacagttataattaaaactgaagttataaatttgtatccatctcttccaccattgtcctg 439

                                                                       
Query: 241 tccaaataacctccagaagcaccttcaggctggcttcctgctacaccagcttctaaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccaaataacctccagaagcaccttcaggctggcttcctgctacaccagcttctaaatgt 499

                                                                       
Query: 301 tatgagcactaaagcttttcctaagacactttgttcaaaaatatttagtaactctaagtt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tatgagcactaaagcttttccaaagacactttgttcaaaaatatttagtaactctaagtt 559

                                                 
Query: 361 aaacatattttaaatatttcttttgcctttgccattct 398
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaacatattttaaatatttcttttgcctttgccattct 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 797
Length adjustment: 9
Effective length of query: 389
Effective length of database: 788
Effective search space:   306532
Effective search space used:   306532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)