Query= MSMg01no495_m17.b1 MSMg01no495_m17.b1 CHROMAT_FILE:
MSMg01no495_m17.b1 PHD_FILE: MSMg01no495_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:56 2005
(244 letters)
>mm_chr5_30100998_30101641
Length = 644
Score = 439 bits (227), Expect = e-128
Identities = 230/231 (99%)
Strand = Plus / Minus
Query: 1 ctggctttgaactttctccttactttgatagatgtaaaggtttttacctaatcagccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctggctttgaactttctccttactttgatagatgtaaaggtttttacctaatcagccact 251
Query: 61 gatgcctttttaacgtaacttatatttgtattttgcctgcttattatcaagagttacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gatgcctttttaacgtaacttatatttgtattttgcctgcttattatcaagagttacaga 191
Query: 121 caattgtgagctgccatgtgggtgctgggaattgaacctgaaagagtcagtcagtgttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 caattgtgagctgccatgtgggtgctgggaattgaacctgaaagagtcagtcagtgttct 131
Query: 181 taactgctgagctgtctctcctgctcctttgatgcctgtttgaagcgtttt 231
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 130 taactgctgagctgtctctcctgctcctttgatgcctgtttggagcgtttt 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no495_m17.g1 MSMg01no495_m17.g1 CHROMAT_FILE:
MSMg01no495_m17.g1 PHD_FILE: MSMg01no495_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:56 2005
(439 letters)
>mm_chr5_29968469_29969310
Length = 842
Score = 777 bits (402), Expect = 0.0
Identities = 424/442 (95%), Gaps = 18/442 (4%)
Strand = Plus / Plus
Query: 1 tactatggagagaatgtgaagtagtcttcacccaggagtgctttgaggactgcgggattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactatggagagaatgtgaagtagtcttcacccaggagtgctttgaggactgcgggattg 260
Query: 61 tcttgccacaacccctggtcatatattcccccattgctctcagcaacctgcagctgtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgccacaacccctggtcatatattcccccattgctctcagcaacctgcagctgtggg 320
Query: 121 ggttggactgccctgatgtcatatcctgagagtaccttcttcaggaagttggtgttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttggactgccctgatgtcatatcctgagagtaccttcttcaggaagttggtgttattt 380
Query: 181 aatttaatgggcagaattggtgaca---gtttgaagataagtctttcttagttttttttt 237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aatttaatgggcagaattggtgacattagtttgaagataagtctttcttagttttttttt 440
Query: 238 ttttcttccactaaaactttaaaataaaatcaagtatttctaatttgttcttagaaacag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttcttccactaaaactttaaaataaaatcaagtatttctaatttgttcttagaaacag 500
Query: 298 tagtgtcaagatcccctgacaggctagattttttgtttgtttttgttttgtttgttttgt 357
||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tagtgtcaagatcccctgacaggctagattttttgtttgtttt---------------gt 545
Query: 358 tttgtttttgtttttgtttttcgagacagggtttctctgtgtagccctggctgtactgga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tttgtttttgtttttgtttttcgagacagggtttctctgtgtagccctggctgtactgga 605
Query: 418 actcactctgtagaccaggctg 439
||||||||||||||||||||||
Sbjct: 606 actcactctgtagaccaggctg 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 842
Length adjustment: 9
Effective length of query: 430
Effective length of database: 833
Effective search space: 358190
Effective search space used: 358190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
