Query= MSMg01no496_a20.b1 MSMg01no496_a20.b1 CHROMAT_FILE:
MSMg01no496_a20.b1 PHD_FILE: MSMg01no496_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
(616 letters)
>mm_chr5_121902891_121903910
Length = 1020
Score = 1100 bits (569), Expect = 0.0
Identities = 607/627 (96%), Gaps = 15/627 (2%)
Strand = Plus / Plus
Query: 4 ggaattccttatttcagacgacagagggatcgtggccagcaggctgtgtgagccagcaca 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttattggagacgacagagggatcgtggccagcaggctgtgtgagccagcaca 263
Query: 64 ggacattcaatcccagtgctagctgggaaaactggcaggctggtctctgagttggaagcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggacattcaatcccagtgctagctgggaaaactggcaggctggtctctgagttggaagcc 323
Query: 124 aaacctcatccatatactgtgttcctggaactagtaccttccatatctaagttccatcct 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 324 aaacctcatccatatactgtgttcctggaactagtaccttccacatctaagttccgtcct 383
Query: 184 tagcacccaagggggaaagcacaactttaatcacaccactccaaaggccaagggtggcga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagcacccaagggggaaagcacaactttaatcacaccactccaaaggccaagggtggcga 443
Query: 244 acctgagttcaaggccagcctggtctacagagtgagttctaggctattcaaagtcaacaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acctgagttcaaggccagcctggtctacagagtgagttctaggctattcaaagtcaacaa 503
Query: 304 gggtcttcgaaagacagacacaaaacaggctgggtgtggactacttgccagtactgggga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gggtcttcgaaagacagacacaaaacaggctgggtgtggactacttgccagtactgggga 563
Query: 364 ggcaagtag--t--ccaaattgggggggcggggggaaggaaaaagagcgaatgatgaatg 419
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcaaggaggatgcccaaattgggggggcggggggaaggaaaaagagcgaatgatgaatg 623
Query: 420 aagataggttggtcagtggcctatccatgtatacaaatctacattcgcgtgcacacacac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagataggttggtcagtggcctatccatgtatacaaatctacattcgcgtgcacacacac 683
Query: 480 ac----------ctgtagaatcatgaaaaagctagaccatgttgtgcttttttttttccc 529
|| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 acacacacacacctgtagaatcatgaaaaagctagaccatgttgtgcttttttttt-ccc 742
Query: 530 tcttttttttattactgttaaatctcaaaccctaggtgagacaaacggctgtggtgacta 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcttttttttattactgttaaatctcaaaccctaggtgagacaaacggctgtggtgacta 802
Query: 590 acatcaaagtggacctggccatgaggt 616
|||||||||||||||||||||||||||
Sbjct: 803 acatcaaagtggacctggccatgaggt 829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1020
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1010
Effective search space: 612060
Effective search space used: 612060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_a20.g1 MSMg01no496_a20.g1 CHROMAT_FILE:
MSMg01no496_a20.g1 PHD_FILE: MSMg01no496_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:15 2005
(623 letters)
>mm_chr5_122075478_122076500
Length = 1023
Score = 830 bits (429), Expect = 0.0
Identities = 488/509 (95%), Gaps = 4/509 (0%)
Strand = Plus / Minus
Query: 7 ctgagaacagagctcacagggcggtgtccatgcctggaatctgcatctctgctttgcatg 66
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 507 ctgagaacagagctcacagggcggtgtccatgcctggaatctgcatctctgttttgcatg 448
Query: 67 tactttacatggcttcagctggctttcagagtgggatgggcacctctctgtctaggtggc 126
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 tactttacatggcttcagctggcttccagagtgggatgggcacctctctgtctaggtggc 388
Query: 127 cagaagccaagag--caggttttatggtggctgagggcaaggttctcaaccccagaggat 184
|||||||| ||| | || || |||||||||||| || |||||||||||||||||||||
Sbjct: 387 cagaagcc--gaggcccggcttcatggtggctgagagcgaggttctcaaccccagaggat 330
Query: 185 tgtggcagccaggaaccatttgtgttcccagcacattccgaggttagatcatgcccggcc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 329 tgtggcagccaggaaccatttgtgttcccagcacattccgaggttagatcatgcacagcc 270
Query: 245 tgtttgtgcccctggggtcacagcaactgaccctgtgcataacagcttccttggtcagta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 269 tgtttgtgcccctggggtcacagcaactgaccctgtgcataacagcttccttggtcaata 210
Query: 305 tgtccaggcatggtatcttatgcctttaattctagcactcgtgagctgaggcaggaggat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgtccaggcatggtatcttatgcctttaattctagcactcgtgagctgaggcaggaggat 150
Query: 365 tgctgaaactttcagactagagtatgacactgtctcaaatagaagtcattggccatgagc 424
||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct: 149 tgctgaaactttcagactagagtatgacattgtctcaaacaaaagtcattggccatgagc 90
Query: 425 cccttaaaggctggggactctgctactaccatggcagcagagtgaggatctgcaggaggg 484
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 89 cccttaaaggctagggactctgctactagcatggcagcagagtgaggatctgcaggaggg 30
Query: 485 tcagttaggggtgaccaagctggtgtggg 513
||||| |||||||| ||||||||||||||
Sbjct: 29 tcagtcaggggtgatcaagctggtgtggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
