BAC Information

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BAC

Clone NameMSMg01-496B01
Chromosome5 (Build37)
Map Location 15,184,992 - 15,185,643
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496B01.T7 (MSMg01no496_b01.b1)MSMg01-496B01.TJ (MSMg01no496_b01.g1)
ACCAG572961AG572962
length738744
length of high quality
(start - end)
638 (53 - 690)652 (83 - 734)
definitionCHROMAT_FILE: MSMg01no496_b01.b1 PHD_FILE: MSMg01no496_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:16 2005CHROMAT_FILE: MSMg01no496_b01.g1 PHD_FILE: MSMg01no496_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNNNACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTACTTCTAAGCCCCATTTTTTAATGGGGTTAT
TTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATT
AGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTTG
TGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGA
GTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATT
GCTGTTCTGTTCAGGAATTTTTCCCCTATGCCCATATCTTCAAGGCTTTT
TCCCACTTTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTT
CCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATACGTATGGATCG
ATTCGCACTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTT
GAAAATGCTGTCTTTCTTCCGCTGGATGGTTTTAGCTCCCTTGTCGAAGA
TCAAGTGGCCATAGGTGTGTGGGTTCATTTCTGTGTCTTCAATTCTGTTC
CATTGGTCTACTTGACTGTCTCTATACCAGTACCATGCAGTTTTTATCAC
AATTGCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGG
TTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGT
AAAAACCCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGAAAGAACAAGAG
CCCAAAAGGCAGAGGAGAAGTGTTCATGGGTGCACTAGCCAGTTACCTCT
GGAAGAGCAGCTGCATGGATTCAGGATGCACTTCATGCACACTGGGTGCC
ATGCTGGATGGCTGTGGAAAGTCATCTCTTACTAAGTCCTAATCAAAATG
CTTCTAGAGAACTCCACACTGAGTCAGGGCTTTCTGTTCCCAAGCAAACC
ACAGCACTGATCTCCATCTGTTTTTCTCTGACTCTTAAGACATCCTTCCA
AATTGAAAAACAAAGCACAAAATCATCTTAATTGCCTTGCCAAAGGATTG
GAAAGGAGCACCACTTTTTGTTCAGAAGACAACTTCAGAAAACAAAAGAG
AAGCCTCAAACGGGCCAAAAGCCACAAAATGAAAAACAAAAGAAAAACAA
GGCTGGCTGTCTACTGCCAGCAGGCGTTCACCAGGGAGAGGAGCTCTGAC
TCCAAAATAGTCACTTTAACATTTTGTCAATGATGGCAAAAGGCCATGGG
TGCTGGCTAAAGGAAGGAAAGGATGTTCCAGGAAGAAAACAGGTCTCTTT
GTTGCAAGAACTGCATTCTCACTTGTATCCAATGCTGATAACTGGCAGCA
GAAACTCTGGGAGGGTCACATATATGTGGTGACACAAGAAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_b01.g1 MSMg01no496_b01.g1 CHROMAT_FILE:
MSMg01no496_b01.g1 PHD_FILE: MSMg01no496_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:16 2005
         (652 letters)



>mm_chr5_15184792_15185843
          Length = 1052

 Score = 1253 bits (648), Expect = 0.0
 Identities = 651/652 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 accaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcactagccag 793

                                                                       
Query: 61  ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactgggtgccat 733

                                                                       
Query: 121 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttctagagaac 673

                                                                       
Query: 181 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctccatctgtt 613

                                                                       
Query: 241 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcatcttaat 553

                                                                       
Query: 301 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgccttgccaaaggattggaaaggagcaccactttttgttcagaagacaacttcagaaaa 493

                                                                       
Query: 361 caaaagagaagcctcaaacgggccaaaagccacaaaatgaaaaacaaaagaaaaacaagg 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 492 caaaagagaagcctcaaacgggccaaaagccacaaattgaaaaacaaaagaaaaacaagg 433

                                                                       
Query: 421 ctggctgtctactgccagcaggcgttcaccagggagaggagctctgactccaaaatagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctggctgtctactgccagcaggcgttcaccagggagaggagctctgactccaaaatagtc 373

                                                                       
Query: 481 actttaacattttgtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 actttaacattttgtcaatgatggcaaaaggccatgggtgctggctaaaggaaggaaagg 313

                                                                       
Query: 541 atgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtatccaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgttccaggaagaaaacaggtctctttgttgcaagaactgcattctcacttgtatccaa 253

                                                               
Query: 601 tgctgataactggcagcagaaactctgggagggtcacatatatgtggtgaca 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgctgataactggcagcagaaactctgggagggtcacatatatgtggtgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)