Query= MSMg01no496_e19.b1 MSMg01no496_e19.b1 CHROMAT_FILE:
MSMg01no496_e19.b1 PHD_FILE: MSMg01no496_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:35 2005
(671 letters)
>mm_chr5_13967849_13968919
Length = 1071
Score = 1029 bits (532), Expect = 0.0
Identities = 560/574 (97%), Gaps = 8/574 (1%)
Strand = Plus / Minus
Query: 98 cttgattcttccaaattgacatcttgattattgcaaatgttttcccatactttaccaaat 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 cttgattcttccaaattgacatcttgattattgcaaatgttttcccatactttaccaaat 1012
Query: 158 gaggagtcttcaaaaaagattgatctgacacattttgagcttttctttgaacaagtagta 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 gaggagtcttcaaaaaagattgatctgacacattttgagcttttctttgaacaagtagta 952
Query: 218 aattgcaacttgatatcattaaaatgtggaatatatatatatatatatatatatatatat 277
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 951 aattgcaacttgatatcattaaaatgtgga--------atatatatatatatatatatat 900
Query: 278 atatatatatatatatatatctttatatccagttaatctgaaatctagccatagtatata 337
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 atatatatatatatatatacctttatatccagttaatctgaaatctagccatagtatata 840
Query: 338 ctcagtttccgcttctgcttctggtgtcatgaaatgttaagcaataaaactgtaatagac 397
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 839 ctcagtttccgcttctgcttctggtggcatgaaatgttaagcaataaaactgtaatagac 780
Query: 398 tcttgcatacctcaattgtttcttattcaccatctgcgaactgtgaagtagtttgcacca 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tcttgcatacctcaattgtttcttattcaccatctgcgaactgtgaagtagtttgcacca 720
Query: 458 tgtgtataggttgtttgttaagtaagacacaggcagctgggttaggtgtagctgtccgtt 517
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tttgtataggttgtttgttaagtaagacacaggcagctgggttaggtgtagctgtccgtt 660
Query: 518 gtcttcagatgaaagtagttcgaacagtgctgattgtgactggctggagctccatttcaa 577
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gtcctcagatgaaagtagttcaaacagtgctgattgtgactggctggagctccatttcaa 600
Query: 578 tcattgcctgagtcacagctattaattgcaaaggccatttctcaagctaggttttgatct 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tcattgcctgagtcacagctattaattgcaaaggccatttctcaagctaggttttgatct 540
Query: 638 catgatctgcaggttgcagttcattgagtgagga 671
||||||||||||||||||||||||||| ||||||
Sbjct: 539 catgatctgcaggttgcagttcattgaatgagga 506
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 249 tatatatatatatatatatatatatatatatatatatatat 289
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tatatatatatatatatatatatatatatatatatatatat 921
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 251 tatatatatatatatatatatatatatatatatatatatat 291
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tatatatatatatatatatatatatatatatatatatatat 921
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 253 tatatatatatatatatatatatatatatatatatatatat 293
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tatatatatatatatatatatatatatatatatatatatat 921
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 255 tatatatatatatatatatatatatatatatatatatatat 295
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tatatatatatatatatatatatatatatatatatatatat 921
Score = 80.0 bits (41), Expect = 6e-19
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 257 tatatatatatatatatatatatatatatatatatatatat 297
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tatatatatatatatatatatatatatatatatatatatat 921
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 248 atatatatatatatatatatatatatatatatatatatat 287
||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 atatatatatatatatatatatatatatatatatatatat 921
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 109
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 11
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_e19.g1 MSMg01no496_e19.g1 CHROMAT_FILE:
MSMg01no496_e19.g1 PHD_FILE: MSMg01no496_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:35 2005
(645 letters)
>mm_chr5_13834451_13835494
Length = 1044
Score = 1042 bits (539), Expect = 0.0
Identities = 623/659 (94%), Gaps = 16/659 (2%)
Strand = Plus / Plus
Query: 1 taatttggaaagagtttaataccactccccatgctgtaatgaccccacagccatgaaact 60
||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct: 188 taatttggagagagtttaataccactccctatgctgtagtgactgcacagccatgaaact 247
Query: 61 catttaactgatacttcataaccataattttgctagtgctatgggttataatacatgtat 120
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 248 catttaactgatacttcataaccatatttttgctagtgctatgggttgtaatacatgtat 307
Query: 121 tctttgatgtagaattttcccaaagggatattgacccatatgttaagaactaccaagcta 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tctttgacgtagaattttcccaaagggatattgacccatatgttaagaactaccaagcta 367
Query: 181 gagtatataaaggattgtaaagttaataaaaaaaaaaac----cttaaatcccaactgcc 236
||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 368 gagcatataaaggattgtaaagttaa-aaaaaaaaaaacaaaacttaaatcccaactgcc 426
Query: 237 aatcaataagtttgccaaaaaggtaaaacagaaaactctcaaaaacaaaaatataaatat 296
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct: 427 aatcaataagtttgccaaaaaggtaaaacagacaactctcaaaaacaaaaatataattgt 486
Query: 297 ccaacaaatatattttagaaatatttaacattgttagccatcagggaaatccgtttaaaa 356
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 ccaacaaatgtattttagaaatatttaacattgttagccatcagggaaattcgtttaaaa 546
Query: 357 ttactcagagattctagctcatgccaaaacaaaataaa----------gaaaggaacaaa 406
|||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 547 ttactcagagattctagctcatgccaaaacaaaacaaaacaaaacaaagaaaggaa-aaa 605
Query: 407 caaaaccaaacagaaaaggcatatgaagatacaggaacacttactgtaagtgatcctacc 466
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 606 caaaaccaaacagaaaaggcatatgaagatagaggaacgcttactgtaagtgatcctacc 665
Query: 467 tgtatatcaaagattaaaacatatattgagatgagagtaagtgtggatagagggcagaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgtatatcaaagattaaaacatatattgagatgagagtaagtgtggatagagggcagaat 725
Query: 527 attagtggtttagatagtctatttatttctttttctacttattcattcacaccccaatca 586
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 726 attagtggtttagatagtctatttatttctttttctacctattcatttacaccccaatca 785
Query: 587 atgactccctccaggttaccacctcccaccatccttcacaccatcaccctatcctttta 645
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atgactccctccaggtcaccacctcccaccatccttcacaccatcaccctatcctttta 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space: 656590
Effective search space used: 656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
