NTTTTTGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAAAAGAGGAT
CCGCGGAATTCTTCATGCTACTGAGATATCAAGAGGCCCTGAGGGTTTGG
CCAATAAGCTTCCCTTCTCAGACATGTCTCTCTGCAAGAGGTATTCAATC
TCTGGTCCACCCTGGAAAGGCAGACCCATTTTCCACGATGAACAGTCAAT
AAACAGTATGGGTAATCATTGACTCTTTCATCAAGATGCTCTGTGGGGAG
CATGGAGAAAGAATTCAACTACAGAACCATAGCCCAAGTCTCCTGCAGAA
GGTCCCTCTGGGATCCCAAATTTCTGCCACGAAGCTTAGAACAATGAGTT
AAGCTGGAGTTCCGATTCCCTTGGCCCTGAACTCATCATCATCCTCAGCC
TGCCTGCCCCCAACTCTGTTTCCAGCTCTACATAACCCAGCAGTGCCTGG
ATGTCCCGGAGTTTGGGACACACCCCCCCCCCCCCCCCGCCGCCATCCCT
AGCTCATCATGGCAGGCCCGTGGACCCGATCCTTCATTCCCAACTCCTCT
GTGCAGTTTTCCAGCAGTGACTGGATGCCTGGGAGTCAAGGAACCCCAGC
TTTGGCCTACCACATTCTAGGCTGTGTTTTCCCACCCCCTGAACTATGCC
CCTGAACTATACCCGATGGCAGTGGTGCATGGTAAACACAGACTAGCTCC
CTATGTTTTGCCTCCCCAGAGGTGTTTCTCACTCCCCAGCATTGAGG

TTTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGCGATAAAAAGAGAATTCCTTTCCTAAGTGCA
TAGCCCAGAGAAATGGATCCATGTCTCCACAAAGCTCACACACAAATCTG
TTGCGGATTTGGTCTAATGCTTGTATTGTGTTAATTGTGTCCCCAAAATT
GCAAGAGAATTGTTCCCATCCCCAGCTGGTTTTGATTGGTAAATAAAGTT
TCCCAGTTGTTTTCTTATTGGGNCTTTGGGGGTATATAAGGGGGGTGTTA
ATGTAAAATCCCCTCATAAAATTGGGGGGGTGCTTTTCCATGGGGGGTAA
AATAACCTTTTTTTTTTTTCTTGTATAAAAAATTTAATTCATCGTCTCTT
TTTTTTTCTCTATCTCTTTCCCACTCTATTCCACTTTCCTTACTTCTTAT
TATTTTTTTTTTCTATACTCTTCCCCTTTTTTTTCCCATTTTTCTTTTTC
TCTCCCTCCTTTCTTTTTTTTATCTATTCTTTTCCTACCTCTCTATTCTT
CTCTTCTTTTCTTCTGATTTTTTTCTCTTTTCCTTTCCTACCTCCCCTAT
CTACACCCTTTAATCTTTTTTATTTCATTCTCCCCGCTTCTGAATCCATC
TACGTTCCCTCTTCCCCTTTTTTTTCCCCCACATTTCCGCCGTTAATTTT
ACAGACTTTTTCTATTTTTACCG

Query= MSMg01no496_h08.b1 MSMg01no496_h08.b1 CHROMAT_FILE:
MSMg01no496_h08.b1 PHD_FILE: MSMg01no496_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:47 2005
         (590 letters)



>mm_chr5_27112434_27113424
          Length = 991

 Score =  980 bits (507), Expect = 0.0
 Identities = 564/591 (95%), Gaps = 15/591 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatcaagaggccctgagggtttggccaataagcttcccttctcagacatgtctctctgc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atatcaagaggccccgagggtttggccaataagcttcccttctcagacatgtctctctgc 274

                                                                       
Query: 61  aagaggtattcaatctctggtccaccctggaaaggcagacccattttccacgatgaacag 120
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 275 aagaggtattcaatctctggtccaccctggaaaggtggacccattttccacgatgaacag 334

                                                                       
Query: 121 tcaataaacagtatgggtaatcattgactctttcatcaagatgctctgtggggagcatgg 180
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 tcaataaacggtatgggtaatcattgactctttcatcaagaggctctgtggggagcatgg 394

                                                                       
Query: 181 agaaagaattcaactacagaaccatagcccaagtctcctgcagaaggtccctctgggatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agaaagaattcaactacagaaccatagcccaagtctcctgcagaaggtccctctgggatc 454

                                                                       
Query: 241 ccaaatttctgccacgaagcttagaacaatgagttaagctggagttccgattcccttggc 300
           |||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ccaaacaactgccactaagcttagaacaatgagttaagctggagttccgattcccttggc 514

                                                                       
Query: 301 cctgaactcatcatcatcctcagcctgcctgcccccaactctgtttccagctctacataa 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 515 cctgaactcatcatcatcctcagcctgcctgcccccaactctgtttccagctctacgtaa 574

                                                                       
Query: 361 cccagcagtgcctggatgtcccggagtttgggacacaccccccccccccccccgccgcca 420
           ||||||||| |||||||||||||||||||||||    |||||||||||           |
Sbjct: 575 cccagcagtacctggatgtcccggagtttgggag---ccccccccccc-----------a 620

                                                                       
Query: 421 tccctagctcatcatggcaggcccgtggaccc-gatccttcattcccaactcctctgtgc 479
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 tccctagctcatcatggcaggcccgtggaccccgatccttcattcccaactcctctgtgc 680

                                                                       
Query: 480 agttttccagcagtgactggatgcctgggagtcaaggaaccccagctttggcctaccaca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttttccagcagtgactggatgcctgggagtcaaggaaccccagctttggcctaccaca 740

                                                              
Query: 540 ttctaggctgtgttttcccaccccctgaactatgcccctgaactatacccg 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctaggctgtgttttcccaccccctgaactatgcccctgaactatacccg 791


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space:   568980
Effective search space used:   568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)