NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCC
GCGGAATTCTTTGGTATTTCAAGCTCATGCTAGACTATCTGCAAAGATAA
ATATAATCAGAGGAAAAGTATATCAGAATTGAAGTACTTCTGACAATGGT
CTAATCATGTTGGGCAATTGAACATGTTTGTCCAGAGAAAATGAATTTGA
ATGACTTAGATTGTGGTATTATAATAGAGATTTGCTAATCCCCTGATCAG
TTAAAATGGAATTTTTTTTTGAGTTCAAAATACAACTTCAATAATTGGTC
CATGAAGATAGAATCAGAACACTGTGTTTCTAGAGTAACCAGAATAAGAA
TTTGTGATATCTCCATGCTGCATGCGTTTCTTAATCTCTGAATGTCTGTA
GTAACTTCATTGTTCAGAATAATTATCCACCACATGAAGTGATCATGTTT
CATTTATAAAACAACTTCTTACTTCTGAGACATTTCTGTTTGGATCCAGC
CACTGGTATCTATGCTTCTTTCTTTTCATTAACTCATGAGAGTCTACATG
GTAATATGTCCTTATCATCAGTATAGAGAAGTCATTGATGAAAAAGCTGG
TATTTCAGCATGGGGAATGTAGGAGAAATAGCTTTGCTGTGGTAAAGATC
CAGTTGTACTACTAATAATTCTATAAGCTAATCAAAGTCTTCAAACATTT
CTTGATTTCATATTCTTAATCTGTCAAAAAAGAATTATTCAGCTAAACTT
G

NCCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGATCTGTTGGATACCCTTCC
ATCCAAGCTCTCAGCAGGTGACACCCAAATTCAAGGTGAGCCTAATTGAT
CCTGGGAATAGCCATCAGAAAGTCCCAGATGCCAGGAAAGCAAGAGGCTC
CCAGAATCCAATGGGGGTGACATTAACAGAAATATCCAACAAAGAAGNNA
GAACTCTGGTAGAGACCGTGTCCAGAGGTTAGTCATGGCCCTACTTCAGG
GGTGGGACCACCCACCATCTCCAAAATTTTAACCCAGAATTGCTCTAGTC
TAAAGAAAATACAGGGGACTAAAGTCTGGGAGCTANAAGACTGGAAAGGA
AAAGGGTTCATTCCCAGAAAACTGGTTGCCACTGGAGGATCCATCCCCTA
TGGAAACCCCCAAAAGCCCGGATTTCTATTTCCCAAAAACGGGGTTTGGT
TGNNCCCCAAGGCGAGGNAAGCTGGGCTCCCCCNAAAAAGGTTTTTTGCC
CAAAACCTGGGCCCAAAATAGAAGGCGGAAAGGGTTTTTCCCCCCAAAAT
TGTGTTTTGTGGGCAGGGGGGGGCCCCCCCCGGGTGGGGAAAATTTTGGG
AAAAAATTTGTGGGGGGCCTTCTTAAAGGGGGGTTTTTTCCCCCCCTCCG
CGGGAAGAAAAAAAATAATTTTCTTTCTTCTTAAGAGAGAGGGGGCCCCC
CTTCTTTTTCTTCTACAA

Query= MSMg01no497_a02.b1 MSMg01no497_a02.b1 CHROMAT_FILE:
MSMg01no497_a02.b1 PHD_FILE: MSMg01no497_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:32 2005
         (684 letters)



>mm_chr5_41020513_41021596
          Length = 1084

 Score = 1276 bits (660), Expect = 0.0
 Identities = 666/668 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctttggtatttcaagctcatgctagactatctgcaaagataaatataatcagagg 76
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gaattctttggtacttaaagctcatgctagactatctgcaaagataaatataatcagagg 825

                                                                       
Query: 77  aaaagtatatcagaattgaagtacttctgacaatggtctaatcatgttgggcaattgaac 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaaagtatatcagaattgaagtacttctgacaatggtctaatcatgttgggcaattgaac 765

                                                                       
Query: 137 atgtttgtccagagaaaatgaatttgaatgacttagattgtggtattataatagagattt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 atgtttgtccagagaaaatgaatttgaatgacttagattgtggtattataatagagattt 705

                                                                       
Query: 197 gctaatcccctgatcagttaaaatggaatttttttttgagttcaaaatacaacttcaata 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gctaatcccctgatcagttaaaatggaatttttttttgagttcaaaatacaacttcaata 645

                                                                       
Query: 257 attggtccatgaagatagaatcagaacactgtgtttctagagtaaccagaataagaattt 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attggtccatgaagatagaatcagaacactgtgtttctagagtaaccagaataagaattt 585

                                                                       
Query: 317 gtgatatctccatgctgcatgcgtttcttaatctctgaatgtctgtagtaacttcattgt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gtgatatctccatgctgcatgcgtttcttaatctctgaatgtctgtagtaacttcattgt 525

                                                                       
Query: 377 tcagaataattatccaccacatgaagtgatcatgtttcatttataaaacaacttcttact 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcagaataattatccaccacatgaagtgatcatgtttcatttataaaacaacttcttact 465

                                                                       
Query: 437 tctgagacatttctgtttggatccagccactggtatctatgcttctttcttttcattaac 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tctgagacatttctgtttggatccagccactggtatctatgcttctttcttttcattaac 405

                                                                       
Query: 497 tcatgagagtctacatggtaatatgtccttatcatcagtatagagaagtcattgatgaaa 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcatgagagtctacatggtaatatgtccttatcatcagtatagagaagtcattgatgaaa 345

                                                                       
Query: 557 aagctggtatttcagcatggggaatgtaggagaaatagctttgctgtggtaaagatccag 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagctggtatttcagcatggggaatgtaggagaaatagctttgctgtggtaaagatccag 285

                                                                       
Query: 617 ttgtactactaataattctataagctaatcaaagtcttcaaacatttcttgatttcatat 676
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttgtactactaataattctataagctaatcaaagtcttcaaacatttcttgatttcatat 225

                   
Query: 677 tcttaatc 684
           ||||||||
Sbjct: 224 tcttaatc 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)