BAC Information

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BAC

Clone NameMSMg01-497G03
Chromosome5 (Build37)
Map Location 14,996,195 - 14,996,842
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497G03.T7 (MSMg01no497_g03.b1)MSMg01-497G03.TJ (MSMg01no497_g03.g1)
ACCAG573965AG573966
length753758
length of high quality
(start - end)
370 (325 - 694)618 (76 - 693)
definitionCHROMAT_FILE: MSMg01no497_g03.b1 PHD_FILE: MSMg01no497_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:03 2005CHROMAT_FILE: MSMg01no497_g03.g1 PHD_FILE: MSMg01no497_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:03 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTTCCTCTGAGCCCCATTTTTAATGGGGTTATTTGACTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGACCCCT
ATCTGATTTGTGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATG
AGGTCCCATTTGTCAATTCTCGATCTTACTGCACAAGCCATTGCTGTTCT
ATTCAGGAACTATTCCCCTGTACCCATATCTTCAAGGCTTTTGCCTACTT
ACTCCTCTATAAGTTTCAGTGTCTCTGTTTTTATGTGGAGTTCCTTAATC
CACTTAGATTTGGCCTTAGTACAAGGAGATAGAAATGGATCAATTCGCAT
TCTTCTACATGATAACCACCAGTTGTTCCAGCACCATTTGTTGAAAATGC
TGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAATG
ACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGCTCCATTGGT
CTGGTCTACTTATCTGTCACTATACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTGTAGTACAGCTTTAGGTCCGGCATGGTGGTGATTCCACCAGAG
GTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATT
CCA
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCTCCGAAATCACATCTTATTTCCATAAAACATATA
TGCTGTAGCATACATACATACATACATACATACATACATACATACATATA
CACATACACACATACACACATACACACACACACACATACACACATACACA
CATACACACATACAATTGGTTTGTCTGTTTAGTTTTGGATGGGTTTGAGG
TGTCGTTGTTGTTGGTTTGTTTTTGAAACAGAGTCTGTCTATGTAGCCTT
GGCTGTCATGGAATTTGTTTTGTAAACCAGGCTGGCCTCAAATTTAGAGA
TTCACCTTCTTCTGTCTTCTAAGACCTAGTAGTCAAGTCTCCACGCCCAG
CAGTTTGAATTGTTGGATTAAAGATTTTGGACATTTGTCTACTTTATCTT
TTCTATTAAGATAGAAAGAAGATAGCCTATTATTCAAAATTACTCGGAAA
ATTATTTTATAGTCAGTCATGGCTGGAATGCAGATATAAAAAAATCAGAT
TGTTTGGAACTGAAAAAAAAAGATAAAAAGTTTAAGAAACTCTTTANAAA
TTTCCCTTTTCAAAACTGGCTGGCCATTCATACAGCTCATGAATCTTAAG
GTTTAACAATATAAGTGAGTAGCCTCAGCTTATTTCAGTTTGTCTTAAAT
TTAATTTAGGTTTAATCATGTGTCTATAGACCTGTACTTTTATCATCATG
TTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_g03.g1 MSMg01no497_g03.g1 CHROMAT_FILE:
MSMg01no497_g03.g1 PHD_FILE: MSMg01no497_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:03 2005
         (618 letters)



>mm_chr5_14996025_14997042
          Length = 1018

 Score =  992 bits (513), Expect = 0.0
 Identities = 602/650 (92%), Gaps = 34/650 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatcttatttccataaaacatatatgctgtagcatacatacatacatacatacatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 171 acatcttatttccataaaacatatatgctgtagcatacatacatacacacatacacacat 230

                                                                       
Query: 61  acatacataca----ta------tacaca--tacacacatacacacatacacacacacac 108
           ||| |||||||    ||      ||||||  |||||||||||||||||||||||||||||
Sbjct: 231 acacacatacacacatacacacatacacacatacacacatacacacatacacacacacac 290

                                                                       
Query: 109 aca----------tacacaca--tacacacatacacacataca--------attggtttg 148
           |||          ||||||||  ||||||||||||||||||||        |||||||||
Sbjct: 291 acacacacacacatacacacacatacacacatacacacatacacacaaacaattggtttg 350

                                                                       
Query: 149 tctgtttagttttggatgggtttgaggtgtcgttgttgttggtttgtttttgaaacagag 208
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||  
Sbjct: 351 tctgtttagttttggatgggtttgaggtatggttgttgttggtttgtttttgaaacag-- 408

                                                                       
Query: 209 tctgtctatgtagccttggctgtcatggaatttgttttgtaaaccaggctggcctcaaat 268
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 409 tctgtctatgtagccttggctgtcatggaatttgctttgtaaaccaggctggcctcaaat 468

                                                                       
Query: 269 ttagagattcaccttcttctgtcttctaagacctagtagtcaagtctccacgcccagcag 328
           | |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 469 tcagagattcactttcttctgtcttctgagacctagtagtcaagtctcctcgcccagcag 528

                                                                       
Query: 329 tttgaattgttggattaaagattttggacatttgtctactttatcttttctattaagata 388
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 529 tttgaattgttggattaaagattttggacatttttctactttatcttttctattaagata 588

                                                                       
Query: 389 gaaagaagatagcctattattcaaaattactcggaaaattattttatagtcagtcatggc 448
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 589 gaaagaagatagcctattattcaaatttactcagaaaattattttatagtcagtcatggc 648

                                                                       
Query: 449 tggaatgcagatataaaaaaatcagattgtttggaactgaaaaaaaaagataaaaagttt 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tggaatgcagatataaaaaaatcagattgtttggaactgaaaaaaaaagataaaaagttt 708

                                                                       
Query: 509 aagaaactctttanaaatttcccttttcaaaactggctggccattcatacagctcatgaa 568
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aagaaactctttaaaaatttcccttttcaaaactggctggccattcatacagctcatgaa 768

                                                             
Query: 569 tcttaaggtttaacaatataagtgagtagcctcagcttatttcagtttgt 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tcttaaggtttaacaatataagtgagtagcctcagcttatttcagtttgt 818


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)