BAC Information

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BAC

Clone NameMSMg01-497G04
Chromosome5 (Build37)
Map Location 3,530,357 - 3,530,852
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6
Downstream gene5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497G04.T7 (MSMg01no497_g04.b1)MSMg01-497G04.TJ (MSMg01no497_g04.g1)
ACCAG573967AG573968
length759759
length of high quality
(start - end)
701 (47 - 747)497 (79 - 575)
definitionCHROMAT_FILE: MSMg01no497_g04.b1 PHD_FILE: MSMg01no497_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:03 2005CHROMAT_FILE: MSMg01no497_g04.g1 PHD_FILE: MSMg01no497_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCG
GAATTCTAAACTTTATCAAATGACCCCCAAACCGGATGTTGTTCTCAGTG
AACTGATTTAGCGTTGCTCTTAGTTAGGGTTCTGCTGACCTAATCAAATA
GTGAACAGAAGCAACTCAGTTGGAGAGAGATTAGTTTGGGCTCACGGTTT
AGAATAGCCTGTCATAGGCAGGCACAGTGGTGACAGCAGGTCATAGCTAT
AGCAGCTAAAGTATGAGACAGCCAAGAAACAGAGGACCTGTGAGGAGTAT
TTCACATCCAAACCATAGTATTTTATTCCTGGCCCTCATAGGCTCATGAC
CACTTCATAATTAATACAAACTTTATTCAGTTTAGCTTCAAGAATCCCCA
GAGTTAATAAGTGGAACCATTAAAAAATTCAGGGCAAACTCTTAGCTGTG
AGCCCCTGTAAAGATGGAAAACAAGCTACATTCTTACAATGTATATAGTA
ACATGGAATAAACACTCCCATTGATTGCAAAAGGGAAGATCAGGAGGATA
GCAATGAAAGCACGACTGAAACTCATTGCTATCATCTCCAATAGTGTGTA
GTCTCCATTGACATATAGGCTTCTTCCCTTCCACAGCTGTACACATCAGC
TTCTTAGACCTTCTTCCCAATTTCTCTCTCCCTACTACACAGCAACAGCA
CCATAAGTGATAAGTTCTGATGCCAGCTTGAGATGGCTGCAGTGGCATCC
AAGCACCTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTCGCAAAAATTCAATGACCAGACAATAAATACAT
AAATTTGCATTCTAGCACCCAGTAAGACATCCAGTTTCCAAAGGAGTATT
GATCTGTTACCCTCCAAATTTCCTGCCGGTCTCCTCTCCTGCCCTGTGAC
ATAGAATGAACACTGTAGCTCTCTCTAGGGAAGTCCCATGTTAAGATGCC
TGCATGGAGCCTGGAGTCACCACTCACCTGAGCTGCTTTTGAAAATGGAC
ATCTATGAAATACCCTATGGTTATTTATTTGTGGTCTTTAGATGGTATCG
ACACAAACCTCTACTTTCCCATTCTTGTAAGTGGGAAGGGCTTGGATAAA
TTGACCAGTATTTTCATCAGCTCCAAGGACGGGAGCAAAGGCCTTCAGCT
CAGGGCTTTGAAGAGCAACCTTAGAGATATCCTTTTATGCTTTCCCTCAG
GAAGGCTGTGTAGAGTTTGCTATATGTAACCTAGGTTGTTTCTGATGGTG
AGTAACCAGGAAAGGTAGGGTCGCCAGAGGAGATACGTCACATTCACCCT
TGGATACAGCACAGGGTTCACAGGCCATTCAGAGAAAGGTCTTGGGGGTG
GGAGTGGGGGACCTGGCANGCCAACCTGGTAACTCCATCTGGAGGGCACA
GAGAAGAGCAGAAGCGACATCTACACCAAGACTCCTGCCCAAATGCTTTT
AAGACTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_g04.g1 MSMg01no497_g04.g1 CHROMAT_FILE:
MSMg01no497_g04.g1 PHD_FILE: MSMg01no497_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:03 2005
         (497 letters)



>mm_chr5_3530157_3531052
          Length = 896

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/499 (98%), Gaps = 5/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgaccagacaataaatacataaatttgcattctagcacccagtaagacatccagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aatgaccagacaataaatacataaatttgcattctagcacccagtaagacatccagtttc 637

                                                                       
Query: 61  caaaggagtattgatctgttaccctccaaatttcctgccggtctcctctcctgccctgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 caaaggagtattgatctgttaccctccaaatttcctgccggtctcctctcctgccctgtg 577

                                                                       
Query: 121 acatagaatgaacactgtagctctctctagggaagtcccatgttaagatgcctgcatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 acatagaatgaacactgtagctctctctagggaagtcccatgttaagatgcctgcatgga 517

                                                                       
Query: 181 gcctggagtcaccactcacctgagctgcttttgaaaatggacatctatgaaataccctat 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 516 gcctggagtcaccactcacctgagctgcttttgaaaatggacatatatgaaataccctat 457

                                                                       
Query: 241 ggtt--atttatttgtggtctttagatggtatcgacacaaacctctactttcccattctt 298
           || |  |   | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggctaga---agttgtggtctttagatggtatcgacacaaacctctactttcccattctt 400

                                                                       
Query: 299 gtaagtgggaagggcttggataaattgaccagtattttcatcagctccaaggacgggagc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtaagtgggaagggcttggataaattgaccagtattttcatcagctccaaggacgggagc 340

                                                                       
Query: 359 aaaggccttcagctcagggctttgaagagcaaccttagagatatccttttatgctttccc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaaggccttcagctcagggctttgaagagcaaccttagagatatccttttatgctttccc 280

                                                                       
Query: 419 tcaggaaggctgtgtagagtttgctatatgtaacctaggttgtttctgatggtgagtaac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcaggaaggctgtgtagagtttgctatatgtaacctaggttgtttctgatggtgagtaac 220

                              
Query: 479 caggaaaggtagggtcgcc 497
           |||||||||||||||||||
Sbjct: 219 caggaaaggtagggtcgcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)