MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-497I22
Chromosome	5 (Build37)
Map Location	120,229,306 - 120,229,540
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039488, EG665194, LOC100039529, LOC100039542, Tbx3
Downstream gene	EG433945, Tbx5, Rbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039488 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039488
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	EG665194 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665194 MGI:3647618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs

name	LOC100039529 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039529
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100039542 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039542
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Tbx3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21386 MGI:98495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG433945 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433945 MGI:3648222
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Tbx5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21388 MGI:102541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm19 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74111 MGI:1921361
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039609 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Lhx5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16873 MGI:107792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sdsl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:257635 MGI:2182607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sds (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231691 MGI:98270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1300012G16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71772 MGI:1919022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc24a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170756 MGI:2180781
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tpcn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:252972 MGI:2182472
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Iqcd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75732 MGI:1922982
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110008J03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100764 MGI:1922021
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71990 MGI:1919240
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC546886 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Rasal1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19415 MGI:1330842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dtx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14357 MGI:1352744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Oas2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246728 MGI:2180852
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Oas3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246727 MGI:2180850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039488 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254544 GeneID:100039488
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to R10D12.10 transcript_id : XM_001472970.1

name	EG665194 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254546 GeneID:665194 MGI:3647618
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs product : predicted gene, EG665194 transcript_id : XM_975198.2

name	LOC100039542 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254547 GeneID:100039542
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein LOC100039542 transcript_id : XM_001473078.1

name	Tbx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37622346 GeneID:21386 MGI:98495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 3 transcript_id : NM_011535.2

name	Tbx3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38327622 GeneID:21386 MGI:98495
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 3 transcript_id : NM_198052.1

name	EG433945 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94375585 GeneID:433945 MGI:3648222
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : predicted gene, EG433945 transcript_id : XM_975483.1

name	Tbx5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098079 GeneID:21388 MGI:102541
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-box 5 transcript_id : NM_011537.2

name	Rbm19 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:30794153 GeneID:74111 MGI:1921361
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 19 transcript_id : NM_028762.1

name	LOC100039609 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254549 GeneID:100039609
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to reproductive homeobox on X chromosome 8 transcript_id : XM_001473185.1

name	Lhx5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388418 GeneID:16873 MGI:107792
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LIM homeobox protein 5 transcript_id : NM_008499.3

name	Sdsl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20589948 GeneID:257635 MGI:2182607
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine dehydratase-like transcript_id : NM_133902.2

name	Sds (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704135 GeneID:231691 MGI:98270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine dehydratase transcript_id : NM_145565.1

name	1300012G16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343676 GeneID:71772 MGI:1919022
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1300012G16 gene transcript_id : NM_023625.3

name	Slc24a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18875375 GeneID:170756 MGI:2180781
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 24 (sodium/potassium/calcium exchanger), member 6 transcript_id : NM_133221.1

name	Tpcn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254191 GeneID:252972 MGI:2182472
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : two pore channel 1 transcript_id : NM_145853.2

name	Iqcd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893038 GeneID:75732 MGI:1922982
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : IQ motif containing D transcript_id : NM_029408.2

name	1110008J03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383593 GeneID:100764 MGI:1922021
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110008J03 gene transcript_id : NM_029096.2

name	Ddx54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:55742726 GeneID:71990 MGI:1919240
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 transcript_id : NM_028041.2

name	LOC546886 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254551 GeneID:546886
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to hCG1652305 transcript_id : XM_001473234.1

name	Rasal1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802160 GeneID:19415 MGI:1330842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAS protein activator like 1 (GAP1 like) transcript_id : NM_013832.3

name	Dtx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802233 GeneID:14357 MGI:1352744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : deltex 1 homolog (Drosophila) transcript_id : NM_008052.3

name	Oas2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21644596 GeneID:246728 MGI:2180852
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 2'-5' oligoadenylate synthetase 2 transcript_id : NM_145227.1

name	Oas3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130089 GeneID:246727 MGI:2180850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 2'-5' oligoadenylate synthetase 3 transcript_id : NM_145226.2

name	LOC100039488 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254545 GeneID:100039488
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473020.1

name	EG665194 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375582 GeneID:665194 MGI:3647618
definition	codon_start : 1 product : hypothetical protein protein_id : XP_980292.1

name	LOC100039542 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254548 GeneID:100039542
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473128.1

name	Tbx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37622347 CCDS:CCDS19613.1 GeneID:21386 MGI:98495
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0048754 - branching morphogenesis of a tube [Evidence IMP]; GO:0007569 - cell aging [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0030879 - mammary gland development [Evidence IMP] [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : T-box 3 protein isoform 1 protein_id : NP_035665.2

name	Tbx3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38327623 CCDS:CCDS19614.1 GeneID:21386 MGI:98495
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0048754 - branching morphogenesis of a tube [Evidence IMP]; GO:0007569 - cell aging [Evidence IDA]; GO:0007275 - development [Evidence IEA]; GO:0030879 - mammary gland development [Evidence IMP] [Evidence IGI]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : T-box 3 protein isoform 2 protein_id : NP_932169.1

name	EG433945 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94375586 GeneID:433945 MGI:3648222
definition	codon_start : 1 product : hypothetical protein protein_id : XP_980577.1

name	Tbx5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34098933 CCDS:CCDS19615.1 GeneID:21388 MGI:102541
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI] [Evidence IMP]; GO:0007507 - heart development [Evidence ISS] [Evidence IMP]; GO:0030324 - lung development [Evidence IMP]; GO:0002009 - morphogenesis of an epithelium [Evidence IMP]; GO:0007389 - pattern specification [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : T-box 5 protein_id : NP_035667.1

name	Rbm19 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794154 CCDS:CCDS19616.1 GeneID:74111 MGI:1921361
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 product : RNA binding motif protein 19 protein_id : NP_083038.1

name	LOC100039609 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254550 GeneID:100039609
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473235.1

name	Lhx5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678690 CCDS:CCDS19617.1 GeneID:16873 MGI:107792
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : LIM homeo box protein 5 product : LIM homeobox protein 5 protein_id : NP_032525.1

name	Sdsl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20589949 CCDS:CCDS19618.1 GeneID:257635 MGI:2182607
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA] GO_process : GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : serine dehydratase related sequence 1 protein_id : NP_598663.2

name	Sds (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704136 CCDS:CCDS19619.1 GeneID:231691 MGI:98270
definition	codon_start : 1 product : serine dehydratase protein_id : NP_663540.1

name	1300012G16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560090 CCDS:CCDS19620.1 GeneID:71772 MGI:1919022
definition	GO_function : GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 note : 66.3 kDa product : hypothetical protein LOC71772 protein_id : NP_076114.2

name	Slc24a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875376 GeneID:170756 MGI:2180781
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015297 - antiporter activity [Evidence IEA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0031403 - lithium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : sodium/calcium exchanger protein protein_id : NP_573484.1

name	Tpcn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22003914 GeneID:252972 MGI:2182472
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : two pore channel 1 protein_id : NP_665852.1

name	Iqcd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313054 CCDS:CCDS19621.1 GeneID:75732 MGI:1922982
definition	GO_function : GO:0004618 - phosphoglycerate kinase activity [Evidence IEA] GO_process : GO:0006096 - glycolysis [Evidence IEA] codon_start : 1 product : IQ motif containing D protein_id : NP_083684.1

name	1110008J03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270206 GeneID:100764 MGI:1922021
definition	codon_start : 1 product : hypothetical protein LOC100764 protein_id : NP_083372.1

name	Ddx54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076989 GeneID:71990 MGI:1919240
definition	GO_component : GO:0005730 - nucleolus [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004004 - ATP-dependent RNA helicase activity [Evidence ISS]; GO:0030331 - estrogen receptor binding [Evidence ISS]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005102 - receptor binding [Evidence ISS]; GO:0003723 - RNA binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence ISS] GO_process : GO:0030520 - estrogen receptor signaling pathway [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007046 - ribosome biogenesis [Evidence ISS]; GO:0006396 - RNA processing [Evidence ISS]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 protein_id : NP_082317.1

name	LOC546886 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254552 GeneID:546886
definition	codon_start : 1 product : similar to hCG1652305 protein_id : XP_001473284.1

name	Rasal1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980729 CCDS:CCDS19623.1 GeneID:19415 MGI:1330842
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : RAS protein activator like 1 (GAP1 like) protein_id : NP_038860.2

name	Dtx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83816920 CCDS:CCDS19624.1 GeneID:14357 MGI:1352744
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0010001 - glial cell differentiation [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP] [Evidence IDA] codon_start : 1 note : fractionated x-irradiation induced transcript 1 product : deltex 1 homolog protein_id : NP_032078.2

name	Oas2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21644597 CCDS:CCDS19625.1 GeneID:246728 MGI:2180852
definition	GO_function : GO:0001730 - 2'-5'-oligoadenylate synthetase activity [Evidence IDA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006401 - RNA catabolism [Evidence IDA] codon_start : 1 exception : mismatches in translation note : 2'-5' oligoadenylate synthetase-like 11 product : 2'-5' oligoadenylate synthetase 2 protein_id : NP_660262.1

name	Oas3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21644585 GeneID:246727 MGI:2180850
definition	GO_function : GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : 2'-5' oligoadenylate synthetase-like 10 product : 2'-5' oligoadenylate synthetase 3 protein_id : NP_660261.1

name	LOC100039529 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039529
definition	number : 1 pseudo : _no_value

name	LOC100039529 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039529
definition	number : 2 pseudo : _no_value

name	LOC100039529 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039529
definition	number : 3 pseudo : _no_value

name	LOC100039529 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039529
definition	number : 4 pseudo : _no_value

clone name	MSMg01-336P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324B16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-517B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217P20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-454B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355J16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-409C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-186G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281O02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-497I22.T7 (MSMg01no497_i22.b1)	MSMg01-497I22.TJ (MSMg01no497_i22.g1)
ACC	AG574097	AG574098
length	748	839
length of high quality (start - end)	575 (76 - 650)	239 (80 - 318)
definition	CHROMAT_FILE: MSMg01no497_i22.b1 PHD_FILE: MSMg01no497_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:17 2005	CHROMAT_FILE: MSMg01no497_i22.g1 PHD_FILE: MSMg01no497_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:18 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCACAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CGCGGAATTCAAGGCCTTTTCGCGACTGCATAGTGAGAGCCTATCTCAAG GAAATGTTATTTAAGGGACTGGGGAGGCTCAGTAGGGTGAGCAGGTGCTG TTCAAGCTTAAGGACCTAAGTTCAGATCCCCACAACCCGGGCAAAGCTCA ACATCTGTTGAGCACATTTGTATCCCCAGTGTACCTACAGGGAGACGGGA GATAGAGACCAGAGTATCCCACAGTAACTTCTGGACTGCCTAGAATGGCA TATACAGTGGGGGACAGTGAGAGATGGTACCTAAAGCAATACGGAAGGTG AGGGCTGACCTTTGTGTACACACACACACACACACACACACACACACACA CACACACACTGACGTTTAAGAGGATCCGTTTGGATCTGTTCCTAAAATTA GATGGGAGATGTCATACTTGAGTGTCGTTTGGGAGCAGGTCTGTAGCTTT TGTCTTTAGATTGTCAAAGGAACTCAAACAGAAAAAGAAAAGCCACCTCA CTGCATGTCCCCATCTCTGTGGNTCTGTGTGTGTGTGTGTGTGTGTGTGT GTTCGCGCGCACGCAAGAGCCTGTCTCTGGCTGTGTCTCTGTCTCTCTGT CTCTGTCTCTGTCACTGTCTCTCTCTCTCCCTCTCTCTGGAAAGAGCCAG CTTCACAGGTATGATATAGACACTGGATGACTTGAATATGTGTCCCCG	TTTTTCGATGCAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGACCCAAGCCTTCATCCCA GCACCCAGTTGGGGGATGCTAATGTTCTTTGTAGCCTACAGCCTTCCTGG AAAGGTCTTGTTTGGGGACTGGCTGTCATTCCTAGGTTCAGACCTATTTT TCTTCAGTCTGCAGCTGGGATTATTAGAAGTGGGGTCTTGGAGATGGTTT GGCCAGCTGTGGTTGTCTTGGATTGAGTGAGAGGAGAGGAGAGAGGGGAG GGAGAGAGGAAGGANNNNNNTTTTTTTTTTTNNNNNNNNTNNNNTNNNNN TTTTTTTNNNTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTGTTTGTTTTT GTTTGTTTTGTGTTGGTTTTTTTGTTTGTGTGTTTTTTTTTTTTTTTGTT GGTTTTGTGTTTGTTTTGGTTTTTTGTTTTTTTTTTTTTTTTTTGGTGTG TTGTTTTGTTGTTGTTTTTTGGTGTTTTTTGTTTGTTTTGTTTTTGTTTG TTGTTTTGTTGTTGTTTTTTGTTTTTTTTGTTGTTTTGGTTTTTTTTGTT TTTTTTGTGTTGTGTTTGTGTTTGTTTGGTTGTGTTTTTGTTTTTTTGTG GTGTTGGTGGTGGTTTTTTTGTGTGTTTGTGTTGTTGTTTTTTTTTTTTT TTTGTGTTTTTGTTTGTGTTTGTTTGGTGGTTGGNTGTGTGGTTTTGTGT TTTTTTTGTTGTGTGTTTTGGTTTTTTTTTTGTTCTTGTTTTTGTTGTGT TCTTGTTTTTTGTTTGGCGTTTGTTGCTGTTGTGTGTCN
quality values	Open. Hide. 15 17 19 19 8 7 7 12 12 9 11 15 14 16 28 34 37 37 30 25 25 32 23 18 9 9 9 21 21 41 27 28 19 19 18 23 23 12 9 9 12 9 9 9 9 10 10 13 15 15 15 15 28 28 23 19 19 22 29 29 32 32 19 23 11 11 10 9 7 6 6 6 8 8 9 14 22 30 32 37 37 43 43 43 43 57 53 53 57 57 57 53 57 57 53 53 50 48 43 47 57 42 47 40 42 42 51 54 68 68 68 68 68 68 68 68 68 68 68 68 54 50 47 47 47 47 50 57 57 57 54 54 57 57 57 50 50 50 50 50 57 59 57 59 59 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 57 68 68 68 68 68 59 59 57 52 52 57 57 57 57 57 54 54 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 57 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 57 68 68 68 68 68 68 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 52 62 62 62 62 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 43 43 35 35 35 35 35 35 43 43 62 62 62 62 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 57 52 52 52 52 52 52 52 59 57 57 52 57 52 52 52 57 57 57 52 52 52 57 52 52 52 52 52 57 57 57 57 57 59 59 57 57 57 57 52 52 52 57 57 57 57 57 57 57 54 54 57 57 38 41 20 32 32 43 43 52 57 52 52 52 59 57 57 57 57 57 57 54 54 54 59 57 57 57 57 57 57 44 43 35 35 43 44 57 57 57 59 59 43 43 37 43 43 57 57 44 44 44 41 41 28 37 37 42 42 43 44 44 57 57 48 42 42 35 28 28 37 37 43 47 43 43 43 43 43 48 48 48 57 57 57 57 57 48 57 57 48 48 48 48 48 57 43 43 36 36 36 43 47 39 43 39 33 33 32 34 23 20 23 28 28 36 39 41 41 41 41 37 37 37 37 35 37 35 30 30 39 39 43 43 39 39 35 35 35 59 39 43 48 44 44 43 39 39 39 39 39 59 47 27 27 3 0 3 27 27 40 39 39 39 47 37 37 32 32 39 43 43 48 48 48 48 48 47 47 43 39 39 37 37 28 23 23 24 24 30 39 34 40 39 39 36 35 35 31 24 28 20 20 23 28 31 30 30 30 33 30 24 18 18 19 23 27 32 23 32 24 32 23 23 23 23 23 36 36 48 36 33 16 16 12 21 21 34 34 11 11 11 19 22 9 10 11 11 11 11 16 16 22 23 32 24 28 28 34 28 37 22 19 19 28 27 33 37 37 37 28 22 23 18 15 10 11 11 23 19 15 13 15 14 24 17 15 10 10 10 10 10 10 11 11 13 20 24 24 19 22 12 20 11 12 12 19 21 28 30 30 30 33 35 32 24 24 23 20 7 10 6 6 6 10 10 16 8 8 9 8 8	Open. Hide. 6 6 7 7 11 6 6 8 8 9 10 9 9 13 6 6 6 8 10 15 37 31 37 37 37 37 37 37 31 31 37 37 37 25 23 9 9 9 9 9 9 9 9 10 10 21 19 28 24 22 29 30 37 37 37 37 37 39 59 47 47 37 23 23 9 10 12 12 12 11 11 11 23 17 23 22 24 30 28 33 33 36 36 50 50 50 50 50 50 59 59 42 42 36 36 42 48 48 50 48 48 50 54 50 53 50 50 50 50 59 68 68 68 50 50 48 48 48 54 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 59 59 59 57 59 59 68 68 68 68 68 59 59 59 59 50 50 50 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 59 59 57 53 53 53 53 53 53 53 53 50 59 59 59 59 59 59 27 27 3 0 0 0 0 0 0 3 13 13 12 9 9 8 11 9 12 3 0 0 0 0 0 0 0 0 3 0 0 0 0 3 0 0 0 0 0 3 8 9 16 9 9 3 0 0 0 3 9 10 9 8 10 11 11 10 12 12 14 13 8 8 8 8 8 10 8 13 15 13 9 8 9 9 8 8 10 10 8 8 8 8 8 8 10 8 6 9 6 6 6 6 8 8 10 14 10 10 10 10 10 9 9 9 13 16 29 12 11 8 8 9 10 8 8 6 6 6 6 7 8 17 22 16 14 10 12 14 12 15 8 8 8 8 8 8 9 11 11 10 10 10 10 9 12 9 19 19 11 13 10 10 10 10 11 11 11 17 15 10 10 9 9 9 9 9 9 10 12 17 13 15 11 15 15 22 22 25 13 11 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 8 8 8 8 10 12 12 10 10 10 9 7 6 8 8 6 8 8 13 13 10 12 8 10 6 6 6 11 11 8 8 8 8 8 10 8 8 8 12 10 6 6 6 6 8 10 13 6 6 6 6 6 6 6 6 8 8 16 11 9 8 8 8 8 8 10 15 14 19 13 13 9 10 10 12 12 12 10 8 6 6 11 10 19 17 10 10 6 6 6 6 9 10 10 10 12 9 9 7 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 6 6 10 8 9 11 10 10 10 10 10 10 13 20 13 8 6 6 6 6 6 8 8 10 8 8 6 6 6 6 9 11 11 15 20 18 11 14 11 8 8 8 6 6 6 11 9 10 9 10 6 6 6 6 10 10 8 8 8 9 15 15 15 11 11 10 12 8 9 8 10 6 6 6 6 6 10 7 7 6 6 6 8 9 6 8 6 6 7 7 13 10 10 10 10 10 12 11 8 8 6 6 3 0 3 8 6 6 6 6 6 6 8 8 9 10 6 6 6 7 6 10 15 16 13 8 8 6 8 6 6 6 8 12 12 17 8 8 6 6 6 10 10 6 6 6 6 6 6 6 6 7 10 10 8 8 8 8 8 8 13 10 9 9 7 7 7 8 8 11 10 10 6 6 6 8 8 7 8 6 6 8 11 8 6 6 6 6 6 11 8 8 8 8 8 11 9 9 6 6 6 6 7 6 6 6 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no497_i22.g1 MSMg01no497_i22.g1 CHROMAT_FILE:
MSMg01no497_i22.g1 PHD_FILE: MSMg01no497_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:18 2005
         (239 letters)



>mm_chr5_120229106_120229744
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacccaagccttcatcccagcacccagttgggggatgctaatgttctttgtagcctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacccaagccttcatcccagcacccagttgggggatgctaatgttctttgtagcctac 260

                                                                       
Query: 61  agccttcctggaaaggtcttgtttggggactggctgtcattcctaggttcagacctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccttcctggaaaggtcttgtttggggactggctgtcattcctaggttcagacctattt 320

                                                                       
Query: 121 ttcttcagtctgcagctgggattattagaagtggggtcttggagatggtttggccagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttcagtctgcagctgggattattagaagtggggtcttggagatggtttggccagctg 380

                                                                  
Query: 181 tggttgtcttggattgagtgagaggagaggagagaggggagggagagaggaagga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggttgtcttggattgagtgagaggagaggagagaggggagggagagaggaagga 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information