Query= MSMg01no497_k16.b1 MSMg01no497_k16.b1 CHROMAT_FILE:
MSMg01no497_k16.b1 PHD_FILE: MSMg01no497_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:26 2005
(508 letters)
>mm_chr5_33750037_33750949
Length = 913
Score = 874 bits (452), Expect = 0.0
Identities = 500/526 (95%), Gaps = 18/526 (3%)
Strand = Plus / Plus
Query: 1 ccagccagcacctgtgtgtctgcctttcacatcactgcactgtgcagtttcgctcatgtg 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 188 ccagccagcacctgtgtgtctgcctttcacatcaccgcactgtgcagtttcgctcatgtg 247
Query: 61 cactcccactgcttcctctgcccttcaggcacccagcaagcaacctctccagcatttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cactcccactgcttcctctgcccttcaggcacccagcaagcaacctctccagcatttcct 307
Query: 121 ggcctcacctctagttttttttttttttttt----------atgtgatgggtgttttgca 170
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 308 ggcctcacctctagtttttttttttttttttttttttttttatgtgatgggtgttttgca 367
Query: 171 agcttgtatgtttgtcaccatgtgtgtgcctagtgcctgaggaggccagaaga---cagc 227
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 368 agcttgtatgtttgtcaccatgtgcatgcctagtgcctgaggaggccagaagaagacagc 427
Query: 228 aggtcccctgggaatggaatcgtttagttgtaaactgccgtgcggtgctgggaactggac 287
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 428 aggtcccctgggaatggaatcgggtagttgtaaactgccgtgcggtgctgggaactggac 487
Query: 288 ctgggtcttctgaaagaacagccattgctctgaagtgctgagccatccttccagccctcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 488 ctgggtcttctgaaagaacagccattgctctgaagtgctgagccatccttctagccctcc 547
Query: 348 tgctcctcgactttgatagaagatgtcttcaacacccctttc-----tgactgccagaat 402
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 548 tgctcctcgactttgatagaagatgtcttcaatacccctttcctttctgactgccagaat 607
Query: 403 ggtgctgtgctgtcttccccaggtgacttttccttcttgcccaacttctgctgtgaagtc 462
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 608 ggtgctgtgctgtcttccccaggtgacttttccttcttgcccaacctctgctgtgaagtc 667
Query: 463 tgcccagtctcagaaatggtgcatcatcttctctgcctttggtgac 508
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgcccagtctcagaaatggtgcatcatcttctctgcctttggtgac 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 913
Length adjustment: 10
Effective length of query: 498
Effective length of database: 903
Effective search space: 449694
Effective search space used: 449694
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_k16.g1 MSMg01no497_k16.g1 CHROMAT_FILE:
MSMg01no497_k16.g1 PHD_FILE: MSMg01no497_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:26 2005
(584 letters)
>mm_chr5_33891236_33892219
Length = 984
Score = 1096 bits (567), Expect = 0.0
Identities = 576/579 (99%)
Strand = Plus / Minus
Query: 1 aatagaccatgttaacaaatgggcagtgggctaacagatggtattcacaacatctgaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 aatagaccatgttaacaaatgggcagtgggctaacagatggtattcacaacatctgaaac 720
Query: 61 tcacgagggattgatagaatacacaagagcccaccacccatcaccttgagaatgacaagg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tcaggagggattgatagaatacacaagagcccaccacccatcaccttgagaatgacaagg 660
Query: 121 ctcctgaaagaaaaatgggcagaagctgggacctagtgactccccaggagaaccccgata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctcctgaaagaaaaatgggcagaagctgggacctagtgactccccaggagaaccccgata 600
Query: 181 agccaagtggcatggagtctcttggggtggtcagagtctccagtggtcagaggatctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agccaagtggcatggagtctcttggggtggtcagagtctccagtggtcagaggatctgga 540
Query: 241 cagaagggtatacactcagtaggtgtcagatgagcaaaagttagaagactgtactgttcc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cagaagggtatacattcagtaggtgtcagatgagcaaaagttagaagactgtactgttcc 480
Query: 301 aaggtgcaggcaggagatgttgtctagccctggaggacactatgcaaagccacctggtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aaggtgcaggcaggagatgttgtctagccctggaggacactatgcaaagccacctggtgg 420
Query: 361 taggtagtggggtttcaggtgccagcacgacaggtgtgtagggaagaggcaaagtgagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taggtagtggggtttcaggtgccagcacgacaggtgtgtagggaagaggcaaagtgagtc 360
Query: 421 tggctgggggcagagggcatggcaggagctcagagccaagtggggcccacatgagtatca 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 359 tggctgggggcagagggcatggcaggagctcagagccaagtggggtccacatgagtatca 300
Query: 481 cactggcagtgacctggagaaacatccaagatgctacctaagtgtggaacactagggtct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cactggcagtgacctggagaaacatccaagatgctacctaagtgtggaacactagggtct 240
Query: 541 gagtcaggggcatggagttgactggtggctgtgggctct 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gagtcaggggcatggagttgactggtggctgtgggctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
