Query= MSMg01no498_k06.b1 MSMg01no498_k06.b1 CHROMAT_FILE:
MSMg01no498_k06.b1 PHD_FILE: MSMg01no498_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:46 2005
(480 letters)
>mm_chr5_41154090_41154969
Length = 880
Score = 861 bits (445), Expect = 0.0
Identities = 476/493 (96%), Gaps = 14/493 (2%)
Strand = Plus / Plus
Query: 1 ttagggtcagtctttactagtaaactgggaaatggttctcaggatttttgtccatttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttagggtcagtctttactagtaaactgggaaatggttctcaggatttttgtccatttcag 246
Query: 61 ttagttggaatgtaaaagttgaaataacaattggggaaatcagg----ttttc----ttt 112
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 247 ttagttggaatgtaaaagttgaaataacaattggggaaatcaggttttttttctttattt 306
Query: 113 c----tttctttctttaccccccccc--tttttttgtatatttctttctttgttttggtt 166
| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 307 ctttgtttctttcttcaccccccccccttttttttgtatatttctttctttgttttggtt 366
Query: 167 cttttagagaaagtctcatgtagattaattgggcctcaaactccctgtatagacaaggcc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cttttagagaaagtctcatgtagattaattgggcctcaaactccctgtatagacaaggcc 426
Query: 227 ttgaatggttatcctccatatactttctgagtagtaagattatagacatgtacctctcta 286
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgaatggttatcctccatatacttcctgagtagtaagattatagacatgtacctctcta 486
Query: 287 caactgtttttctcagtgttgggagttgagcctagaacttcaatcatgcaaagcaagaat 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caactgtttttctcagtgttgggagttgagcctagaacttcaatcatgcaaagcaagaat 546
Query: 347 aacaattgaaacatattcttgcctaaatgtaatatttcttgctctttcatatttcttata 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aacaattgaaacatattcttgcctaaatgtaatatttcttgctctttcatatttcttata 606
Query: 407 tttatataaattagcatctctccacttgaatttctgttaggttagattgtgtgtgtgtgt 466
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 607 tttatataaattagcatctctccacttgaatttctgttaggttagattttgtgtgtgtgt 666
Query: 467 gtgtgtgtgtgtg 479
|||||||||||||
Sbjct: 667 gtgtgtgtgtgtg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_k06.g1 MSMg01no498_k06.g1 CHROMAT_FILE:
MSMg01no498_k06.g1 PHD_FILE: MSMg01no498_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:46 2005
(254 letters)
>mm_chr5_41248753_41249406
Length = 654
Score = 484 bits (250), Expect = e-141
Identities = 253/254 (99%)
Strand = Plus / Minus
Query: 1 tgatacagtaaacatgggatgaagtcttttggggagggagtggtacctttgttacctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tgatacagtaaacatgggatgaagtcttttggggagggagtggtacctttgttacctttg 395
Query: 61 tttgtcagagctaacagaatcaatgcctaacaaatattctaaacaaaggaacagtgcagt 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 394 tttgtcagagctaacagaatcaatgcctaagaaatattctaaacaaaggaacagtgcagt 335
Query: 121 gtgtgaatgttcattgttacttataggagaaatcctctgttttgggttgaagcatggccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gtgtgaatgttcattgttacttataggagaaatcctctgttttgggttgaagcatggccc 275
Query: 181 cctgacatataccgctgtatcatgtcctgatgcctgtgcatattgtgtgtttgtgtctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cctgacatataccgctgtatcatgtcctgatgcctgtgcatattgtgtgtttgtgtctga 215
Query: 241 gaaaaaatagtcat 254
||||||||||||||
Sbjct: 214 gaaaaaatagtcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
