NAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCATCTTTCCTTACAATCTATTGTAAGTCTGAAATCATTTT
ATACTAGAAAGTTAGAAATAAAACATTCCTAGGTGACTAGGCATGGAAAA
TAGGTTTGCTTAGGGACGTTGTGTTATAGTGTGTGCAGGGGTCAGAGACA
GGACACAGTGGGAGGCCTGCACAGAATGGAGAGGAAACTCACTCATTGCC
AGTTATCTCATTTGCACCCCTTTTATTCCTTTAGCTGCTGGGGTAAGGAG
AAGAAAGTTTTACTTTTGATTACAAGTTCAGAATGGCCAGCCAAGAGTGA
CAGGCATCTTGAGAGAAAGCTTTGTCACTGATGTTCACCAAAAAAGCCTT
TTCTCAGCTCTGATGCTTGTGGGGTGGGGTGCTATTGCAGACACATGTCT
GTTCAGTTCAGAATATGGCCTTTGACAATAGGATTCACTTCACCTACAAC
AATACCCATCATTGGTCTAAGAATAAACAAAGACTCATTGCCCAGTATGG
TAGGCATTTAACCAAGGCAGGAGAGGCCCTGAGTCCAATGGCTCTAGGCT
CAACTCAGCTTTTTTGTTTTTCTCCTGATGGTTTTAGTGTTGGTATATTT
TACCAGAAGTAAATCTAGTGAAGTAAGTTAAGCTTCCTTATGTGTAAGTT
TGGAAAATACCAATGTTAACATAATCCTTGGTTGGAATGGTTTTCATAAG
TGGAGGCATGTCCTGTGC

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTTA
ATAGGATTATTTGGTTCTCTGGAGTCTAATTTTTGAATTCTTTGTATATA
TTGGATATTAGCCTTCTGTTGGGTGTAGGGTTGGTAAAGATCTTTCCCCA
ATTTGTTGGTTGCTGTTTTGTCCATACATGGCTTTAAAAATCCTTGTTCT
AAGCACATATTTAAGCATGCTTGTCTCTCGAAACCCTTCGCGGGTCACCA
TGTCCTTTTTTGTCTTTCTTGGTTCTGAAGTGTTGACTGTTTGGACAGTG
CAGTCCACATTATCAGATGCTGGATGCTGGTTCCTGGTCACAAGGGGGTT
AACGTTTGTCACCAGGTAGAGGCCAGGAAGTCGAGTTCAGCAGGTAGTGG
CTGTGGTGACCACCATTGCTCTGACTTGGGAAGCTAGGGGATGAATGGGT
GTCATAAAAAACCAGTATAAATAATTTGTTTGTTAATGCTAAGGATGGGA
AAAGATGGCTGTGGTTTGGAGGTAGAGTGGGGCCCAAGATTTAATGGTGT
CCTAGAAGCCTGACTTCTTTGGCACACCCTTAATAATGGATCTCGTAATG
GATATTTTTTTTTTCTTTTGGCCATTACCTTGAAATTTTTTGCTTTGTGT
TCGGCTCACCCTTGACTCTTTTAGGTTTTTTTTCTCGGCTATTACTATGT
TGGTTTTTTCTCTTCTACN

Query= MSMg01no498_n13.b1 MSMg01no498_n13.b1 CHROMAT_FILE:
MSMg01no498_n13.b1 PHD_FILE: MSMg01no498_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:03 2005
         (636 letters)



>mm_chr5_29526697_29527732
          Length = 1036

 Score = 1139 bits (589), Expect = 0.0
 Identities = 622/635 (97%), Gaps = 6/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatc---tttccttacaatctattgtaagtctgaaatcattttatactagaa 61
           ||||||||||||   ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatcacatt--cttacaatctattgtaagtctgaaatcattttatactagaa 262

                                                                       
Query: 62  agttagaaataaaacattcctaggtgactaggcatggaaaataggtttgcttagggacgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agttagaaataaaacattcctaggtgactaggcatggaaaataggtttgcttagggacgt 322

                                                                       
Query: 122 tgtgttatagtgtgtgcaggggtcagagacaggacacagtgggaggcctgcacagaatgg 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 323 tgtgttatagtgtgtgcaggggtcagtgacaggacacagtgggaggcctgcacagcatgg 382

                                                                       
Query: 182 agaggaaactcactcattgccagttatctcatttgcaccccttttattcctttagctgct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agaggaaactcactcattgccagttatctcatttgcaccccttttattcctttagctgct 442

                                                                       
Query: 242 ggggtaaggagaagaaagttttacttttgattacaagttcagaatggccagccaagagtg 301
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 443 ggggtaagg-gaagaaagttttacttttgattacacgttcagaatggccagccaagagtg 501

                                                                       
Query: 302 acaggcatcttgagagaaagctttgtcactgatgttcaccaaaaaagccttttctcagct 361
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 502 acaggcatcttgagagaaagctttgtcactgatgttcaccacaaaagccttttctcagct 561

                                                                       
Query: 362 ctgatgcttgtggggtggggtgctattgcagacacatgtctgttcagttcagaatatggc 421
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 562 ctgatgcttgtggggtggggtgctattgcagacacaagtctgttcagttcagaatatggc 621

                                                                       
Query: 422 ctttgacaataggattcacttcacctacaacaatacccatcattggtctaagaataaaca 481
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctttgacaataggattcactccacctacaacaatacccatcattggtctaagaataaaca 681

                                                                       
Query: 482 aagactcattgcccagtatggtaggcatttaaccaaggcaggagaggccctgagtccaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 682 aagactcattgcccagtatggtaggcatttaaccaaggcaggagaggccctgagtccgat 741

                                                                       
Query: 542 ggctctaggctcaactcagcttttttgtttttctcctgatggttttagtgttggtatatt 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggctctaggctcaactcagcttttttgtttttctcctgatggttttagtgttggtatatt 801

                                              
Query: 602 ttaccagaagtaaatctagtgaagtaagttaagct 636
           |||||||||||||||||||||||||||||||||||
Sbjct: 802 ttaccagaagtaaatctagtgaagtaagttaagct 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)