BAC Information

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BAC

Clone NameMSMg01-499E18
Chromosome5 (Build37)
Map Location 67,982,382 - 67,982,965
singlet/doubletsinglet
Overlap genenone
Upstream geneApbb2, Uchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik
Downstream geneD830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977, AY616753
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499E18.T7 (MSMg01no499_e18.b1)MSMg01-499E18.TJ (MSMg01no499_e18.g1)
ACCAG575414AG575415
length755764
length of high quality
(start - end)
199 (51 - 249)692 (73 - 764)
definitionCHROMAT_FILE: MSMg01no499_e18.b1 PHD_FILE: MSMg01no499_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:39 2005CHROMAT_FILE: MSMg01no499_e18.g1 PHD_FILE: MSMg01no499_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:25:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATAGGTCGAGGATCCGCGGAATTCATTAGGCATTTGCAGATG
CCTTTGTGGGAGGCCAGGCAGCAATTTAAACTTTCAGTCCTTTATGCTAT
TACTTTTGGTTGCAAGGGACTGAAATCCAAGACAAACTAGATTTAGGGCA
GAGGAAATTTGTCTTCTTCCATGCCCAAGGTTAATATGGAAGAAAGGGAG
GAAAAGGAAGGAAAGAAGGAAGGAAGGAAGGGAGAGAGGGAGGGAGGTAT
TTTTTTTTTTTTTTTTTTTTTTTTTTTNNTNNNNNNNNTNNNNNNNNNTT
TTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTCCCCTTTTTTTTTTTTTTTTTTTNNTTTTTTTNTNTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTNTTTTTTTTCTTTNTTTTTTTTTTTTNTTTTTTTT
TTNNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTNT
TTTTTTTCTTTTTTTTTTTTTTTTTAATTTTTTNTTCTTTTTGTTTTTTT
TTTTTTTTTTTCTTTCTTTTNNTTTTTTTTTTCTTTTTTTTTTTCTCTTT
TCTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATGTAAGTTCAAACAGTGTGGTGAA
CATAGGCAGTGCTGCAGTAGAGATGCTGGAAGCTGCCAGCCAGTGGCACA
CCCTGGAGCAATTCTCCAGATAAAAGGTGTCATTAAAACGAAGCAGCCCA
CTACCCTCTAAGAAAGTCTCTGGACGCGTACGGTAGTTCTGAGCTTGGAT
ACACTCAATAATAAAGCCTTCACAGGTCAGAGAAAAGGGCTACACAGGAG
TAATAGCTTAGTAAAAGTGTCCACTCATCCATCTCAGTTATCCTTAAAGC
TAAGAACACGGTAAACCTTTGCGAAAATTTATAAAAAATGAGAATATAAG
AAAGTAAACAAATAGATCAACTTAACTCATTAGGAGATAGAGATGGAGAT
GGAGATGATAGAGATAGAGACAGAGACAGAGATAGAGATAATCCTGCCTC
TTTGAGGCTAGAGAGATGGCCTTGTGGCTAAGAGTGCAGAAGACCTAAGC
TTGGTCCTAGCTCCCATGCCCTGTGCTTCACAGCACCCTGTAGCTCCAGT
GCCCGGGTTCCACTTCCTCTGGCCACCGTGAGCGCCAGCGTTCACACGTG
CATGCTCACATACAAACACATACACGTAATCAAAACTCAAATAAGTTTTT
AAAAAGAAAACATCTTGCCTCTAACAATTAAAAAATCCCAGGCTCCAAGA
GGTCTATGGAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_e18.g1 MSMg01no499_e18.g1 CHROMAT_FILE:
MSMg01no499_e18.g1 PHD_FILE: MSMg01no499_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:39 2005
         (692 letters)



>mm_chr5_67982382_67983473
          Length = 1092

 Score =  994 bits (514), Expect = 0.0
 Identities = 556/584 (95%), Gaps = 24/584 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatgtaagttcaaacagtgtggtgaacataggcagtgctgcagtagagatgctggaag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tttatgtaagttcaaacagtatggtgaacataggcagtgctgcagtagagatgctggaag 525

                                                                       
Query: 61  ctgccagccagtggcacaccctggagcaattctccagataaaaggtgtcattaaaacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctgccagccagtggcacaccctggagcaattctccagataaaaggtgtcattaaaacgaa 465

                                                                       
Query: 121 gcagcccactaccctctaagaaagtctctggacgcgtacggtagttctgagcttggatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gcagcccactaccctctaagaaagtctctggacgcgtacggtagttctgagcttggatac 405

                                                                       
Query: 181 actcaataataaagccttcacaggtcagagaaaagggctacacaggagtaatagcttagt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 404 actcaataataaagccttcacaggtcagagaaaaggactacacaggagtaatagcttagt 345

                                                                       
Query: 241 aaaagtgtccactcatccatctcagttatccttaaagctaagaacacggtaaacctttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaaagtgtccactcatccatctcagttatccttaaagctaagaacacggtaaacctttgc 285

                                                                       
Query: 301 gaaaatttataaaaaatgagaatataagaaagtaaacaaatagatcaacttaactcatta 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 284 gaaaatttataaaaaatgagaatataagaaagtaaacaaatagatcaaattaactcatta 225

                                                                       
Query: 361 ggagata------gagatggagatggagatgatagagatagagacagagacagaga---- 410
           |||||||      |||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 224 ggagatagagatggagatggagatggagatgatagagatagagacagagacagagacaga 165

                                                                       
Query: 411 ---------t-----agagataatcctgcctctttgaggctagagagatggccttgtggc 456
                    |     |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 164 gacagagactgagacagagataatcctgcctctttgaggctagagagatggccttgtggt 105

                                                                       
Query: 457 taagagtgcagaagacctaagcttggtcctagctcccatgccctgtgcttcacagcaccc 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 taagagtgcagaagacctaagcttggtcctagctcccatgccctgtgcttcacagcaccc 45

                                                       
Query: 517 tgtagctccagtgcccgggttccacttcctctggccaccgtgag 560
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  tgtagctccagtgcccgggttccacttcctctggccaccgtgag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)