BAC Information

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BAC

Clone NameMSMg01-499K04
Chromosome5 (Build37)
Map Location 41,567,563 - 41,567,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499K04.T7 (MSMg01no499_k04.b1)MSMg01-499K04.TJ (MSMg01no499_k04.g1)
ACCAG575670AG575671
length766766
length of high quality
(start - end)
246 (81 - 326)300 (335 - 634)
definitionCHROMAT_FILE: MSMg01no499_k04.b1 PHD_FILE: MSMg01no499_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:04 2005CHROMAT_FILE: MSMg01no499_k04.g1 PHD_FILE: MSMg01no499_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTATTCGCGGA
ANTCNNCAACGAANTTGACGGAAAAATGGGCAAATTTGTCTGGAATAACA
AAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGC
GGAATCACCATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAA
AACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAA
TTGAAGATCCTTAAATGAACCCACACACCTATGGTCACTTGATCTTCGAC
AAGGGAGCTAAAACCATCCAGTGGAATTTTTTTTGCATTTTCAACAATTG
GTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCAT
ACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCAC
ATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCT
TGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTT
GTGCTGTAAGATCGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGT
TTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGA
TTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGTGACCAATATCCA
ACATATATAAAGAACTTCAGAAGGTGGACTTCATAAAATCAATAATCCCC
TTAAAAATGGCGCTCA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCAAAAAAAGGGGGNNNCAACAGNGAAAGGAAAGA
TGAATCACCGAGGCAAGACATCATGGGTCAAAGAACAAGACCATCCATTC
ATATCTTGACTCTTCCACTCTCTAGCACGATGACAGAAAGCCCTTTCATC
TTATTTACTTCTGCAAAATGTGGATAATAGTATTAAAATCACAGTGTAGT
TATGAAATTATAGTGAGATCATAAAGATGAAATACCTGGCATTTTAAGCA
ATCCAAATGAAGCTCATTTTCTTCTCATTTTTTGCTTCAAAATGTGCCTC
CCAGCAGTTGAACTGGACCAGACCTGAACCAACTTCTCAAAACTGAACTT
GAACTAACTTCTAAGGAACAAATAAAATTGTCAAAAGAAAGTTCTGATCC
TTCTGCTTTCCAACCCATACAGATGCAGCATGATCATTCTGTCCTTCTGC
ATTATTTCTTACAACCTTGTTTTAAAAGGCAAGAATGATGGTCTCTCGAC
ATCACCATGATACGCCAAAATATGATGTCATTTGGTGTTGAAATCGCTCA
CCATCCCCTGTAATATCACTTCTGTTGGCTGGGATGTCTTGGATAAGTCA
TAAGTGACTTTGCTTAATCCAACGTGTTAGGCACAAATTTCTCCTAATCT
CGAGCCAGTACCAATCTACCTTGAGCATTCTGGAATGTTACTTTACTTGA
TGATTGCAGCACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_k04.g1 MSMg01no499_k04.g1 CHROMAT_FILE:
MSMg01no499_k04.g1 PHD_FILE: MSMg01no499_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:04 2005
         (300 letters)



>mm_chr5_41567363_41568062
          Length = 700

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcaaaatgtgcctcccagcagttgaactggaccagacctgaaccaacttctcaaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcaaaatgtgcctcccagcagttgaactggaccagacctgaaccaacttctcaaaact 260

                                                                       
Query: 61  gaacttgaactaacttctaaggaacaaataaaattgtcaaaagaaagttctgatccttct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 gaacttgaactaacttctaaggaacaaataaaattgtcaaaagaaggttctgatccttct 320

                                                                       
Query: 121 gctttccaacccatacagatgcagcatgatcattctgtccttctgcattatttcttacaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gctttccaacccatacagatgcagcatgatcattctgtcgttctgcattatttcttacaa 380

                                                                       
Query: 181 ccttgttttaaaaggcaagaatgatggtctctcgacatcaccatgatacgccaaaatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgttttaaaaggcaagaatgatggtctctcgacatcaccatgatacgccaaaatatg 440

                                                                       
Query: 241 atgtcatttggtgttgaaatcgctcaccatcccctgtaatatcacttctgttggctggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtcatttggtgttgaaatcgctcaccatcccctgtaatatcacttctgttggctggga 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)