BAC Information

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BAC

Clone NameMSMg01-499N06
Chromosome5 (Build37)
Map Location 23,293,369 - 23,293,699
singlet/doubletsinglet
Overlap geneRint1
Upstream geneLhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7
Downstream gene4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499N06.T7 (MSMg01no499_n06.b1)MSMg01-499N06.TJ (MSMg01no499_n06.g1)
ACCAG575817AG575818
length772764
length of high quality
(start - end)
551 (78 - 628)331 (328 - 658)
definitionCHROMAT_FILE: MSMg01no499_n06.b1 PHD_FILE: MSMg01no499_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:19 2005CHROMAT_FILE: MSMg01no499_n06.g1 PHD_FILE: MSMg01no499_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAATACGCGCGG
AATCACCAGAGCAGTACTAAAAAGAAAGTCAGATATAATAGAATAATTAT
GCACACCAAGACCAACTGAAAAGCAGTCACACACAAATGAAATCTAGATA
GCTGTTGTCAAGGGCTAAGGTTAGGAGAAATGGGAACAACTGTTGTTACA
AAGAGTTGTCGCAGGCTACTGAGATATCTCTATCCCATCCTTGTCCCCAG
CAAATTCTGAATATCATAAGGAAATACATTAAAACTCTATACTCGGGCTG
GAGAGATGGATCAAAGGTTAAGAGTTTTATCTGCTCTTCCGGAGGTCCCA
GCAACCACATGGTGGCTTACAACCATCTGTAATGAGATCTGATGCCCTCT
TCTGGTGTGTCTGAAACAGCAACAGTGTACTTACATAAAATAAAAATAAA
ATAAACCTCCTTACTCCATTAAATTGGAAAACCTGAAAGAAGTAGATGAG
CTTAGTACAAGCCCACTGCACGCGCTAGCTTTTCTATAGATGTGGCATAC
CTGGGACAGTTGAGGTATTTAACAAAATAATTCTGTGGTAATTTTTATTT
TTATCCTCATTTTGCTGATAAAGAGATTGAAGCTAAAGGATTTTAAATTA
TTTTCCTTAGGAAGCATATTTTGTTCCAGTGTGATATAAATCAAATTTCT
TTATCCCAGTGCTTGTGATGAATTCCATGGTATTCTGCCTGCAATGTCTC
AAACTAACCTCAGTACACATCA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTGCGGAAAAACTTTATAGAGCAAGCTGGCAGGGACTAGT
GGCAATCTTCCCGCCTCCGCTCCCGACTTGTGGCTCACCATCCTAAGGGT
ATCATGAGTATTTTCTCCTCCCCTCCTTCCTCTCCCCTCCTTGAATTCAG
TGTGTAGCTGGAGTTGACTTTGAACTACTGGTTTTCCCGCCTTCACCTCC
CTTTTGGTGGAATTCCAAGTGTGAGACACCATGCCAGGGCCGAATTTTAT
TTTTAGTAACTCCAAAGATTGGTAGTGAGCTCCTGCACAGAACTCAGCAG
CCTGGGAAGCTGTAGGGCTGCCAGGTTCCCTGAGCGGCCAACATGACATC
CAACCAGCAGGGGGCGCCACAGAACAGGACAGCGGCGCGCAGATATGCCT
CTCTAGGCCAAGAGAACGGAACCAGAGAGTCGGTGATAGGAAGTCGAGGT
GGCGCTCAACCCTGCGTCCCAGAAGGCTGGTCTGGTCGCCCAGTCTGTGT
GTTCCCTAGCCGGACTCTGCAGGCCGGGCTGGCGGTGCATGGAATCCAGA
ATTCGTGCGGAGGCAGGATGCTTGCGGCTGACGATATCGGCGAAGTGCCG
GCAGCCCCGGTGAGGTGTCCCTGGAAACCCGGGGAAGGGACGCTGGTGAC
CCTGCGAGGTGGCACAGACCCCACCTCCGCCCCGGGGACAGGTTACCTTT
GGAGTGGTTTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_n06.g1 MSMg01no499_n06.g1 CHROMAT_FILE:
MSMg01no499_n06.g1 PHD_FILE: MSMg01no499_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:19 2005
         (331 letters)



>mm_chr5_23293169_23293899
          Length = 731

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctcctgcacagaactcagcagcctgggaagctgtagggctgccaggttccctgagcgg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agctcctgcacagaactcagcagcctgggaagcagtagggctgccaggttccctgagcgg 260

                                                                       
Query: 61  ccaacatgacatccaaccagcagggggcgccacagaacaggacagcggcgcgcagatatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaacatgacatccaaccagcagggggcgccacagaacaggacagcggcgcgcagatatg 320

                                                                       
Query: 121 cctctctaggccaagagaacggaaccagagagtcggtgataggaagtcgaggtggcgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctctaggccaagagaacggaaccagagagtcggtgataggaagtcgaggtggcgctc 380

                                                                       
Query: 181 aaccctgcgtcccagaaggctggtctggtcgcccagtctgtgtgttccctagccggactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccctgcgtcccagaaggctggtctggtcgcccagtctgtgtgttccctagccggactc 440

                                                                       
Query: 241 tgcaggccgggctggcggtgcatggaatccagaattcgtgcggaggcaggatgcttgcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaggccgggctggcggtgcatggaatccagaattcgtgcggaggcaggatgcttgcgg 500

                                          
Query: 301 ctgacgatatcggcgaagtgccggcagcccc 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 ctgacgatatcggcgaagtgccggcagcccc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)