Query= MSMg01no500_a12.b1 MSMg01no500_a12.b1 CHROMAT_FILE:
MSMg01no500_a12.b1 PHD_FILE: MSMg01no500_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:35 2005
(272 letters)
>mm_chr5_83607368_83608039
Length = 672
Score = 501 bits (259), Expect = e-146
Identities = 265/267 (99%)
Strand = Plus / Minus
Query: 6 gaattcataaggctttcctatgattaaaatatgtgtctgggttaaaatggtaatgtcagc 65
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 472 gaattcataaggctttgctatgattaaaatatgtgtcagggttaaaatggtaatgtcagc 413
Query: 66 aaggcttgagaagataagaacaaaagagtggaatgggaatcagtgaatgaatgtaaacaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaggcttgagaagataagaacaaaagagtggaatgggaatcagtgaatgaatgtaaacaa 353
Query: 126 gaatcacagtatgtgcggctagaaagctacaattggaaaaacaagaagcaagctgcatgg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaatcacagtatgtgcggctagaaagctacaattggaaaaacaagaagcaagctgcatgg 293
Query: 186 tgcccaagaccaggaagactacagaagtatattgccatacagaatcatttagctgcttca 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgcccaagaccaggaagactacagaagtatattgccatacagaatcatttagctgcttca 233
Query: 246 gtgttaaagatacaagagccactgagc 272
|||||||||||||||||||||||||||
Sbjct: 232 gtgttaaagatacaagagccactgagc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no500_a12.g1 MSMg01no500_a12.g1 CHROMAT_FILE:
MSMg01no500_a12.g1 PHD_FILE: MSMg01no500_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:35 2005
(635 letters)
>mm_chr5_83439876_83440910
Length = 1035
Score = 951 bits (492), Expect = 0.0
Identities = 604/660 (91%), Gaps = 42/660 (6%)
Strand = Plus / Plus
Query: 1 caggacagccagggctacactgagaaaccctgtctcaaaaaatc------aaaaaaaaaa 54
||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct: 191 caggacagccagggctacactgagaaaccttgtctcgaaaaatcaaaaaaaaaaaaaaaa 250
Query: 55 aaaaaaaagaatttaatgttttaaattttttccaactcaaaattataaagtgggaatggc 114
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 251 aaaaaaaaga----aatgttttaaaaattttccaactcaaaattataaagtgggaatggc 306
Query: 115 aaaaccaaagcataagattacaggtagtttccattcttttataaataatagcaattctga 174
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 307 aaaaccaaagcataagattacaggtagtttccattcttttataaatgatagcaattctga 366
Query: 175 aataaacctaagtattgttcatgttgcctatattatatttaaaaaaa-tagaaactttat 233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 367 aataaacctaagtattgttcatgttgcctatattatatttaaaaaaaatagaaactttat 426
Query: 234 tattttaaagcttc-tcgtgcatatta-atataatggatttttagtgttttccctagatc 291
|||||||||||||| | |||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 427 tattttaaagcttcat-gtgcatattacatataatggatttttagtgtttaccctagatc 485
Query: 292 ctgaacagagattttcaagatattgttattattattattgttgttgttgttgtt--tg-- 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 486 ctgaacagagattttcaagatattgttattattattattgttgttgttgttgttgttgtt 545
Query: 348 --------attagtctctgtgtatttgtatgtgtgtatttcttttggcttatacttcctt 399
|||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 546 gttgttttattagtctctgtgtat------gtgtgtatttcttttggtttatacttcctt 599
Query: 400 gctatacctccattcctct-tatatgtag--ag--tgcttactcagtataaaaattgtca 454
||||||||||||||||||| | ||||||| || |||||||||||||||||||||||||
Sbjct: 600 gctatacctccattcctctgt-tatgtagtgagaatgcttactcagtataaaaattgtca 658
Query: 455 tttatttttttaaagtaaataaatgaatgagtacatgcaattctttgtttagtgtgagaa 514
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 659 cttatttttttaaagtaagtaaatgaatgagtatatgcaattctttgtttagtgtgagaa 718
Query: 515 tcagcaaaagagagaggagcacagagaaagaaagacctagagagactacaagagagagaa 574
|||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 719 tcagtaaaagagagaggagcacagagaaaga----cttagagagactacaagagagagaa 774
Query: 575 agctctcccatgcatgttatggtttaaatgtgtgtgtatgtgggtcacatatcaactttg 634
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 agctcccccatgcacgttatggtttaaatgtgtgtgtatgtgggtcacatatcaactttg 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
