BAC Information

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BAC

Clone NameMSMg01-500C16
Chromosome5 (Build37)
Map Location 97,651,919 - 97,652,498
singlet/doubletsinglet
Overlap genenone
Upstream geneMrpl1, Fras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598
Downstream geneEG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500C16.T7 (MSMg01no500_c16.b1)MSMg01-500C16.TJ (MSMg01no500_c16.g1)
ACCAG576072AG576073
length691707
length of high quality
(start - end)
656 (36 - 691)582 (60 - 641)
definitionCHROMAT_FILE: MSMg01no500_c16.b1 PHD_FILE: MSMg01no500_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:45 2005CHROMAT_FILE: MSMg01no500_c16.g1 PHD_FILE: MSMg01no500_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATT
GTATTACATGTTATCAAAAGGAATGAGAAATAATTATAAGACTAAAGAAT
AACAGTGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAACC
AAAAATATAAGAATAACAGTGGTGCTGATCTTTTACAGTGGTCACCTCTG
AAGAGGCTGTATACTCAGGCTGTCGAGCGCTGTAGTTAGAACTCTCAGCT
TCAAGGTCTCCATGGTATCAGGAGGAACACAAGAAGAGCTGAAACTTGCA
TGGGGACATATCTAAGGAATGAGCTACTCCACCAAGAATACTGAAAATAT
CATTCTCACAGTTATGAGGCAAAAATTACAGCTCAAACCAGCCACTGCCT
GGATATCAATGCTGAGATAAGCTTTGCATTTCGGGCAGGGCTGCTGCACT
AATTCACTTGGTAGATTACTTGCTGTGTAAGATTGTGGGTCAGAGTTATA
ATCCCCAGGCCCCACACGGATGACCAGGAGGCATACTGGCCCATCTGGGA
TCCCAGCCCTCCTGATACAGAAACAAAATGCCCCAGAGCAAGCTCACTAG
ATGAATTAGTTGAATTGGTGAGCTCTGAATTAATTGAATATATAAAGTGG
AGGAAGAAAAGTACTAGACAATAACTTCTGACCTCCACATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCTTTCTTAGAATTTCCTTTTTTTTTTCCCTTGGTGGCAG
CATAAAGGCAGTTAAAGAGACTTTTGGTGACATTCTCTTTGTTTAATGAA
GCTTGGACTTATGGGCAAGTGCCTTGAACTGCCGTTATTATCTGCATGAG
TGAAAAGGGCTGAGGGTCCAGATCTGTGCAAAGAGTTTTATTGCAAATAG
GCACATTGATCATTCATAATCAGACTTACCAGGTCAGCAGTGCCGCAGAG
CATCATGCGCTGCAAAAGCTGACCAAGAGAGCAGGGGAACGCGTAGATTA
GCACGGCAGTCAAGCACATTGGGTTTTCTTTTCTCCCACGGTGGTCTTTT
CTGCTTTCATCTCGCAGAAAGCGGGTGAGAACCAAACACACTTGAATCTC
ATCCTATGCCGCCTATCACTGGTCCTCCGGGGGGCTCTCCATGTTTCGGG
AACCCTGCTTTGGTAAAAGGTGCATCCCTGTGACGCAGGTCTGTGATTTG
TTTCCTTGTTGTCAGCTATTCAGAACACTGTAGCGCCGTTTCGTTGTCAA
GAGCTTTTTCTTCCTTTGCTCAGAGTCACATTTGGAAAAGACTACAAGAA
AAAGGCTCTCATCTGAAGCCTCAGTGTGATCGTGAAAATTAATGTTCTTG
TTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_c16.g1 MSMg01no500_c16.g1 CHROMAT_FILE:
MSMg01no500_c16.g1 PHD_FILE: MSMg01no500_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:46 2005
         (582 letters)



>mm_chr5_97651719_97652698
          Length = 980

 Score = 1067 bits (552), Expect = 0.0
 Identities = 574/582 (98%), Gaps = 2/582 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttcttagaatttccttttttttttcccttggtggcagcataaaggcagttaaagag 60
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 201 ttctttcttagaatttcctttttttttt--cttggtggcagcataaaggcagttaaagag 258

                                                                       
Query: 61  acttttggtgacattctctttgtttaatgaagcttggacttatgggcaagtgccttgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 acttttggtgacattctctttgtttaatgaagcttggacttatgggcaagtgccttgaac 318

                                                                       
Query: 121 tgccgttattatctgcatgagtgaaaagggctgagggtccagatctgtgcaaagagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgccgttattatctgcatgagtgaaaagggctgagggtccagatctgtgcaaagagtttt 378

                                                                       
Query: 181 attgcaaataggcacattgatcattcataatcagacttaccaggtcagcagtgccgcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attgcaaataggcacattgatcattcataatcagacttaccaggtcagcagtgccgcaga 438

                                                                       
Query: 241 gcatcatgcgctgcaaaagctgaccaagagagcaggggaacgcgtagattagcacggcag 300
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gcagcaggcgctgcaaaagctgaccaagagagcaggggaacgcgtagattagcacggcag 498

                                                                       
Query: 301 tcaagcacattgggttttcttttctcccacggtggtcttttctgctttcatctcgcagaa 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcaagcagattgggttttcttttctcccacggtggtcttttctgctttcatctcgcagaa 558

                                                                       
Query: 361 agcgggtgagaaccaaacacacttgaatctcatcctatgccgcctatcactggtcctccg 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 559 agcgggtgagaaccaaacacacttgaatctcatcctatgcagcctatcactggtcctccg 618

                                                                       
Query: 421 gggggctctccatgtttcgggaaccctgctttggtaaaaggtgcatccctgtgacgcagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gggggctctccatgtttcgggaaccctgctttggtaaaaggtgcatccctgtgacgcagg 678

                                                                       
Query: 481 tctgtgatttgtttccttgttgtcagctattcagaacactgtagcgccgtttcgttgtca 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 679 tctgtgatttgtttccttgttgtcagctattcagaacactgtagtgccgtttcgttgtca 738

                                                     
Query: 541 agagctttttcttcctttgctcagagtcacatttggaaaaga 582
           |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 739 agagctttttcttcatttgctcagagtcacatttggaaaaga 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 980
Length adjustment: 10
Effective length of query: 572
Effective length of database: 970
Effective search space:   554840
Effective search space used:   554840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)