BAC Information

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BAC

Clone NameMSMg01-500E15
Chromosome5 (Build37)
Map Location 96,801,386 - 96,801,863
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500E15.T7 (MSMg01no500_e15.b1)MSMg01-500E15.TJ (MSMg01no500_e15.g1)
ACCAG576166AG576167
length698747
length of high quality
(start - end)
479 (143 - 621)91 (75 - 165)
definitionCHROMAT_FILE: MSMg01no500_e15.b1 PHD_FILE: MSMg01no500_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:54 2005CHROMAT_FILE: MSMg01no500_e15.g1 PHD_FILE: MSMg01no500_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGATCCGCGGAATTCCTTGC
TTTTCCGAATAAGCGGATGAAATGAAACTGAAGGGTCCCTGTAACTGTCA
TCACTTAGACACCGCAACATTCGATTAACCTGGGTGTGGCTGTTGAGTAT
TCAAAGGACTTAGGAATCGCCCAGCAATTCCTCGATGCCTCCCAAAGCCA
TTGTGGGGACAGAGCGGTTTTATATCTGTATTTGAAGCACATATGGGGAC
TCTGTAAACATTAGTTGAAAGAATGAACTGAATCAAGCCAGTAATCATCA
CCGTCTTGAGTTCAGCCACAGCTTGGATGGAACCTGAGTCCTCCCTCCTC
CCACTTCCCCCTCTTCCTCTAGAAACTATTTTCTCAGACCAATGGAAAGT
ACTGTCCAAATTCAGGTGGATACACCCTAACAATTCCTAGCCCCTCCTAA
ACACTTTTTCTGTAGCCACCACTGACTAGGAGTAACTTAAGACAGCTGGT
TTCCCTAGAATAAACTATTTGACTTCATTTTTAAGAAAGCATATAACTGT
GGCACCCAAAGGGGTCTCAAACCATCTTTTGGACTTGCTAAAGGAAAACA
AACTTTAAAAAGAAAAAGGTGAAGGGAGAGACGGGAGCATTACCACGAGG
TACTGTCATATATTTGCATTTGTGGTTCTTAACAAATTGGTTATAAAA
CCATGCTANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGATAGCTAGTATTTTTTGCANGG
GCTGTGAGGCAGGGATGGGAGTTTCAAGAGATGGAGCCTTTCAATATTAN
GCAAGTGCTCTATCAGTTATGACCCTCGGTGTTTTCTTATCCAAATCCGG
CANCAACGGTGGTGACGTAACTTGGCAACTCTGATAGGTTTCCAGGGCCA
ATAATTTTATTAAAATTGGCTTCCAACATTTTTAAAAACCCCAAACGGGA
AAGGACAAAAAAAATTCTGGGCCCCAGGGGGTTGTAATTTTTTTTTCCGG
GGGGGTTGTTTTATTTTAACCCCCCCCCCCCCNTAATATTTTTTTTTTTT
AAAGGGCCCCCCTCTCTTTTTTTGTTTGTGTCCCACAAACAAAAAAAAGG
AGGTNTTATNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGATTGTTCTGGGGGCTGAGGGGGGGGGGGGGGGGGGGGGGGCTGGAAAA
AAGAAAAAACAAAAAAAAAAAGAAAAAAAAACTAAAAAAAAGAAAAAAAA
TGGGGGCGGTNTTNNTTTNTTTTTTTTTNCTTTTTTNTTTGTTGGGGGGT
CTGGGGTGAAAAGGGACAAAAAAAAAAGAAAAAAAAACTGGGGCTNTNNT
TTNNTNTTTTNTCTTTTTTTTTTTNTNNTTTAGTCAATNTGATTNNG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_e15.b1 MSMg01no500_e15.b1 CHROMAT_FILE:
MSMg01no500_e15.b1 PHD_FILE: MSMg01no500_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:54 2005
         (479 letters)



>mm_chr5_96801186_96802063
          Length = 878

 Score =  857 bits (443), Expect = 0.0
 Identities = 470/479 (98%), Gaps = 1/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagtattcaaaggacttaggaatcgcccagcaattcctcgatgcctcccaaagccatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 678 ttgagtattcaaaggacttaggaatcgcccagcaattcctcgatgcctcccagagccgtt 619

                                                                       
Query: 61  gtggggacagagcggttttatatctgtatttgaagcacatatggggactctgtaaacatt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtggggacagagcggttttatctctgtatttgaagcacatatggggactctgtaaacatt 559

                                                                       
Query: 121 agttgaaagaatgaactgaatcaagccagtaatcatcaccgtcttgagttcagccacagc 180
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 558 agttgaaagaatgaactgaatcaagccagtaatcatcaccg-ccagagttcagccacagc 500

                                                                       
Query: 181 ttggatggaacctgagtcctccctcctcccacttccccctcttcctctagaaactatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttggatggaacctgagtcctccctcctcccacttccccctcttcctctagaaactatttt 440

                                                                       
Query: 241 ctcagaccaatggaaagtactgtccaaattcaggtggatacaccctaacaattcctagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 439 ctcagaccaatggaaagtactgtccaaattcaggtggatacaccctaacaattcctaacc 380

                                                                       
Query: 301 cctcctaaacactttttctgtagccaccactgactaggagtaacttaagacagctggttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctcctaaacactttttctgtagccaccactgactaggagtaacttaagacagctggttt 320

                                                                       
Query: 361 ccctagaataaactatttgacttcatttttaagaaagcatataactgtggcacccaaagg 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 ccctagaataaactatttgacttcatttttaagaaagcatagaactgtggcacccaaagg 260

                                                                      
Query: 421 ggtctcaaaccatcttttggacttgctaaaggaaaacaaactttaaaaagaaaaaggtg 479
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 259 ggtctcaaaccatcttttggacttgctaaaggaaaacaatctttaaaaagaaaaaggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space:   407092
Effective search space used:   407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)