BAC Information

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BAC

Clone NameMSMg01-500F02
Chromosome5 (Build37)
Map Location 128,649,307 - 128,649,904
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500F02.T7 (MSMg01no500_f02.b1)MSMg01-500F02.TJ (MSMg01no500_f02.g1)
ACCAG576188AG576189
length658643
length of high quality
(start - end)
598 (61 - 658)594 (50 - 643)
definitionCHROMAT_FILE: MSMg01no500_f02.b1 PHD_FILE: MSMg01no500_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:56 2005CHROMAT_FILE: MSMg01no500_f02.g1 PHD_FILE: MSMg01no500_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATACGACTCACTATATTCAGAGGATCCGCGGAATTCAGAGGATTTCC
TCAGTATCACAGTCCTAACCTTCCACTTTGTGAGACAGAGTCAGTTCAGT
GCGTGCTGCTCTGTACACTGACTAGGGCCAGATGAGCTTCTGAGGGACTG
ACTCTGCAGCCTCTGCCTCCTGTCTTGCTCTGGGAAGACAGGGATTACAT
GCTACCAGATCTGGTTCTATGTGGCTTCTGGAGTTTCGAACTCAGGTCCT
CATGTTTGGCATGCACTTCATGAACTAAGTCATTTCCCTAGCCCCCCGCC
CCCCCACCTCCCAGATTCTATCAGAGCTTGTGCACAGGAATTGCCCTGAT
AACAGGTCTAATGTCACATATAGATTCACTATTGGAGGAGTGTCTCAGTT
TGTTCTGCACTAGGCAGCAGGCTATAAACGCTAGGTAGTGCTCCCCCAGA
ATAACATTTCAGCATACAGTACACTCTGGTCCAACTGCCTTGTTTCTGTG
AGACCTCCAAGACCTAGTTCAAATGACCCATGAGGCATGGCTTCCTGCCT
TTCTGGAACACACACTTGTTCCTTGATCTTTCATGTATTTTTGATGCTTT
GTGTTCTTGGTTTGAGGACATGCCCACCTGTGTGCGGCTGAGAAGATCTT
TTGGTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
TGATCTTTCCAAGACTTTTATCATTAATCTGTGTTGGATTTTGTCAAATG
CTTTCTCCACATCTAATGAGATGATCATGTGGTTTTTGTCTTTGAGTTTG
TTTATATACTGGATTACCTTGATGGATTTCCGTATATTGAACCATCCCTG
CATCCCTGGGATGAAACCTACTTGGTCAGGATGAATGATTGTTTTGATGT
GTTCTTGGATTCAGTTAGCGATAACTTTATTGAGGATTTTTGCATCGATA
TTCATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTTTG
TGGTTTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGAGTAGAG
TACCTTCTGCTTCTATTTTGTGGAATAGTTTGTGAAGAACTGGGATTAGA
TCTTCTTTGAAGGTGTGATAGAACTCTGCACTAAACCCATCTTGTCCTGG
GCTTTTTTTGGCTGAGAGACTATTAATGACTGCTTCTATTTCTTTAAGGG
ATATAGGACTGTTTAGATCATTAACCTGATCTTGACTTAACTTTGGTATC
TGGTATCTGTCTAGAAACTTGTCCATTTCATGCGGGTTCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_f02.b1 MSMg01no500_f02.b1 CHROMAT_FILE:
MSMg01no500_f02.b1 PHD_FILE: MSMg01no500_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:56 2005
         (598 letters)



>mm_chr5_128649108_128650105
          Length = 998

 Score = 1133 bits (586), Expect = 0.0
 Identities = 595/598 (99%), Gaps = 1/598 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcctaaccttccactttgtgagacagagtcagttcagtgcgtgctgctctgtacactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agtcctaaccttccactttgtgagacagagtcagttcagtgcgtgctgctctgtacactg 259

                                                                       
Query: 61  actagggccagatgagcttctgagggactgactctgcagcctctgcctcctgtcttgctc 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 actagggccagatgagcttctgagggactgactctccagcctctgcctcctgtcttgctc 319

                                                                       
Query: 121 tgggaagacagggattacatgctaccagatctggttctatgtggcttctggagtttcgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgggaagacagggattacatgctaccagatctggttctatgtggcttctggagtttcgaa 379

                                                                       
Query: 181 ctcaggtcctcatgtttggcatgcacttcatgaactaagtcatttccctagccccccg-c 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 ctcaggtcctcatgtttggcatgcacttcatgaactaagtcatttccctagccccccgcc 439

                                                                       
Query: 240 ccccccacctcccagattctatcagagcttgtgcacaggaattgccctgataacaggtct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccccccacctcccagattctatcagagcttgtgcacaggaattgccctgataacaggtct 499

                                                                       
Query: 300 aatgtcacatatagattcactattggaggagtgtctcagtttgttctgcactaggcagca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatgtcacatatagattcactattggaggagtgtctcagtttgttctgcactaggcagca 559

                                                                       
Query: 360 ggctataaacgctaggtagtgctcccccagaataacatttcagcatacagtacactctgg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 560 ggctataaacgctaggtagtgctcccccagaataacatttcagcatacagtactctctgg 619

                                                                       
Query: 420 tccaactgccttgtttctgtgagacctccaagacctagttcaaatgacccatgaggcatg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tccaactgccttgtttctgtgagacctccaagacctagttcaaatgacccatgaggcatg 679

                                                                       
Query: 480 gcttcctgcctttctggaacacacacttgttccttgatctttcatgtatttttgatgctt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcttcctgcctttctggaacacacacttgttccttgatctttcatgtatttttgatgctt 739

                                                                     
Query: 540 tgtgttcttggtttgaggacatgcccacctgtgtgcggctgagaagatcttttggtat 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtgttcttggtttgaggacatgcccacctgtgtgcggctgagaagatcttttggtat 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)