BAC Information

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BAC

Clone NameMSMg01-500H03
Chromosome5 (Build37)
Map Location 90,711,707 - 90,711,953
singlet/doubletsinglet
Overlap geneAnkrd17
Upstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733, Cox18
Downstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500H03.T7 (MSMg01no500_h03.b1)MSMg01-500H03.TJ (MSMg01no500_h03.g1)
ACCAG576285AG576286
length735691
length of high quality
(start - end)
---242 (58 - 299)
definitionCHROMAT_FILE: MSMg01no500_h03.b1 PHD_FILE: MSMg01no500_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:05 2005CHROMAT_FILE: MSMg01no500_h03.g1 PHD_FILE: MSMg01no500_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCGTTAAACAACTCACATATTCGTATTGGGCGNAANTCNNNCATTTC
CTACCAGCTGCTTTAACCTCTTATTTGAATGGCANTGTACTATTGANAAT
TACAATACAAAGGATCTAAACACTGTTTACTGTGAANTTTCCTTTGAACA
AATCTTCTGGAACATGTTTAAACTTTCATCATTACCTTAGAAAGGGGAAA
ACTNNNAAAAAACNAAAAACAAACCAACCTTTTTTTTTNNCCNNAAAANA
ACCTTACCAATTTTAAAAGAAAAAAATNNNNNNNNNNNCCCCCCNTTTTT
TTTATATTNNNAAAAGCTCGGCGGGGGCTCGGGGCGGGGCGGGGGGGGGG
GGAGGCGGGGGGGGGGCGGGGGGGGGGGGGGGAACAAAAACTTAGGGTGG
AAACAAACAAAACGAGGCTGGCGGGGGGGGGGGNNNNNNCANNNNNNNNN
TNNNNATAANNNNNNNNATAAATAAAANTTNTNNTNNATATTTTTAAAAA
ATAAATTTTTTTTAAAAAATTTTAAAAAAAAATATAAAAATTTTTTATAA
ATTTNTTTTTTNTTTNNNNNNNTTTTTNTTTTTTNTNTTTTTTNNNTTTT
ATNTTTTTTTTTTTTTTNNTTNANNANNNNNANNNNNNTTATANNTTNNT
TATTTTTTTTTTTTNNNNTTTTTTTTTTTTNTNTTTTATTTNTTTTTTTT
TTTTNATTAATTTTATTTTTTTATGAGGAGGTTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACTGAAACACAACAAGGGTTAATGGTAGCCAGCCCTGCTCA
GACCCTCAATGACACGCTGGATGACATCATGGCAGGTGGGTTTATATTGT
TATGAGCAGGTATCAAATATGATTTGCTTAAGGCGAGTAAGAGTGTGCCA
GCATTTTTTTTTCTTTTTCTTTTTTTTTTCTTTTTTTTTTCCTTTTTTAA
AAAAAAAAAAACATTGCTCAATATTCAACTTGAGAAGTATTTTTTGGACT
TTTGTACCCATTATGTCTTTAGAAAAACTACATTAAATAGTTCTCAGATG
GCTACAGGTCAAATTAAAGATTAGCTCATACACTGTAAATGAACAAATCT
GTCCCGCCTGGGAATCTGTTTTTCAGTAGTGGGTTGAATCTTGGTTTTTA
CTTTTGGTTTTGTTTTTCCACTTTAAGTTCAGAACACGGGTTGGGTTTTG
GCATTTTTGCTTCTGTATTCATACCAATAAAAGGGAAATTGATAAAAATC
TAGGTACAAAGGTAGTAGGACATATTAGGAAGTCTACTTGTGATTGAACA
AAAACCCAAAACTTTTATACTAATGTACCAAGCTTCATGGGGGCTAAAGA
CAAGCCAACAACAATCAAAACAGACACTTTGACAACATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_h03.g1 MSMg01no500_h03.g1 CHROMAT_FILE:
MSMg01no500_h03.g1 PHD_FILE: MSMg01no500_h03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:05 2005
         (242 letters)



>mm_chr5_90711608_90712249
          Length = 642

 Score =  431 bits (223), Expect = e-125
 Identities = 240/247 (97%), Gaps = 5/247 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcactgaaacacaacaagggttaatggtagccagccctgctcagaccctcaatgacacgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tcactgaaacacaacaagggttaatggtagccagccctgctcagaccctcaatgacacgc 287

                                                                       
Query: 61  tggatgacatcatggcaggtgggtttatattgttatgagcaggtatcaaatatgatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tggatgacatcatggcaggtgggtttatattgttatgagcaggtatcaaatatgatttgc 227

                                                                       
Query: 121 ttaaggcgagtaagagtgtgccagcatttttttttctttttcttttttttt--tcttttt 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||
Sbjct: 226 ttaaggcgagtaagagtgtgccagcatttttttttctttttctttttttttctttttttt 167

                                                                       
Query: 179 tttttccttttttaaaaaaaaaaaaa--cattgctcaatattcaacttgagaagtatttt 236
           |||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 166 tttttcctttttaaaaaaaaaaaaaaaacattgctcaatattcaacttgagaagtatttt 107

                  
Query: 237 tt-ggac 242
           || ||||
Sbjct: 106 tttggac 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)