AACAGAGAGTTCGNGACGGCGCGGAANNCNNGGNTTGTCTNNGACCCGGG
GGGNAANANGGNNACNNGANGCCCCGCAGCCCACACAATGAAGCCCCCAC
AAAAGCGGGAAANCAGACCACCAGCAGNCNNAGGAAGGGCAAAGAGCACN
NCCCAACCCCACAGGCGCCAGNCGGGCCCANGGACAGGGNCCAGAGACGC
AGAGAAGCCGCGCAATTTTATGAGGCTCTGGTTTTCTATGGCATATTTTA
GAGCAAAAACCATTGGCGTCTGTCAGGAAATTGTTCTTCTTCANGAGNCG
AGNNCNCCNCACCNCNCNNCTATATTTCGCGCACCGCTTTATGGGACTCC
TCGATCACTGAACTGAGCTTTGCCACATCAAAAATGGATGATTTCATCCT
CTCATGTGACCCCGTTAAACAGACCTTTGGTAAAAGAGCCTTTTTCCCCG
ATGGTTAGACCCCTTGAAACACCAAGGACAAATTTGGGGGTAATTTGGGC
CTTCTTTCATCCTGGACTTCCGCCACCTGGCCCAAACATTTTATTCTATG
GTTGAAAACCCTGGTGTGGGGGGGTTCCCCAAATTACCGCGCCAAAAACT
TCCCTCCGGGGTATAGATTCCAGGATTGCAAGGCCTTTACCCAAAAGGGT
GATTTAGGGAGCCCTTCTTTTTTTTTTTATGTTCTTTCAAAGCCCGCCCC
AATATCCCCGAACGGACCTTAAAAGACGGGTAAATTCCCCCCTGTACCCC
TCCC

CATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGTAAAGGGAATACATAATGTATGAA
TAAACAGAAATTAAGACAGGCTTTTAACAAAGTTCACGGAACCATTGTTA
AATATTACAATGTAGGTAAACCTCAAATTATTATACTGAGTAAAATCTGT
CTGTCACAAAAAGGGTCACATTTAACTTACACCTATTTATATGAATCCTC
CAAATTAGAAAATTAATCACTGATGAGTTATGATTAGAGATAATAAGAGA
AGCTGATGGCAAACAATACAAACTCGGTTACTATCTAAAATTCTAAAGCT
GTAGTTAGATAAAATTTAAACAATGACTTTGTTGAATATTTGCTGAAATG
TGCACTTATACAGGTAGTTTTTTAAAAAAGTTTTATATTTGAATTTATAA
ACTTTTATGAATTTTAAGACTGTTAAAAGTATTTTACTCACTACTTTTAA
CCTAGCCAAAAAAGTTTTTATGCATTATAGGCAGTTTTGACTGTGAATAT
GAACTTTCTACAACACATACTAGCACAGGGAACAGCATCAACACCTACAG
ATTTCTCTAGGAAATGGATAAAACTTACAGCTTACTCTAAACCAAGAATA
TAAAGAGGTGCAAACACCACTAAGCAGTTTTGTAATCTGAACATCTAATA
ATTTCCATTTACTCGTTTGTTTTCATAN

Query= MSMg01no500_h11.g1 MSMg01no500_h11.g1 CHROMAT_FILE:
MSMg01no500_h11.g1 PHD_FILE: MSMg01no500_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:06 2005
         (600 letters)



>mm_chr5_47509224_47510223
          Length = 1000

 Score = 1125 bits (582), Expect = 0.0
 Identities = 595/600 (99%), Gaps = 3/600 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtaaagggaatacataatgtatgaataaacagaaattaagacaggcttttaacaaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtaaagggaatacataatgtatgaataaacagaaattaagacaggcttttaacaaagt 260

                                                                       
Query: 61  tcacggaaccattgttaaatattacaatgtaggtaaacctcaaattattatactgagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacggaaccattgttaaatattacaatgtaggtaaacctcaaattattatactgagtaa 320

                                                                       
Query: 121 aatctgtctgtcacaaaaagggtcacatttaacttacacctatttatatgaatcctccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatctgtctgtcacaaaaagggtcacatttaacttacacctatttatatgaatcctccaa 380

                                                                       
Query: 181 attagaaaattaatcactgatgagttatgattagagataataagagaagctgatggcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagaaaattaatcactgatgagttatgattagagataataagagaagctgatggcaaa 440

                                                                       
Query: 241 caatacaaactcggttactatctaaaattctaaagctgtagttagataaaatttaaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatacaaactcggttactatctaaaattctaaagctgtagttagataaaatttaaacaa 500

                                                                       
Query: 301 tgactttgttgaatatttgctgaaatgtgcacttatacaggtagttttttaaaaaagttt 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 501 tgactttgttgaatatttgctgaaatctgcacttatacaggtagttttttaaaaa-gttt 559

                                                                       
Query: 361 tatatttgaatttataaacttttatgaattttaagactgttaaaagtattttactcacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatatttgaatttataaacttttatgaattttaagactgttaaaagtattttactcacta 619

                                                                       
Query: 421 cttttaacctagccaaaaaagtttttatgcattataggcagttttgactgtgaatatgaa 480
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 620 cttttaacctagccaaaaaagtttttatgcatta--ggcagttttgactgtgaatatgaa 677

                                                                       
Query: 481 ctttctacaacacatactagcacagggaacagcatcaacacctacagatttctctaggaa 540
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctttctacaacacatacaagcacagggaacagcatcaacacctacagatttctctaggaa 737

                                                                       
Query: 541 atggataaaacttacagcttactctaaaccaagaatataaagaggtgcaaacaccactaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 atggataaaacttacagcttactctaaaccaagaatataaagaggtgcaaacaccactaa 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)