Query= MSMg01no500_i04.b1 MSMg01no500_i04.b1 CHROMAT_FILE:
MSMg01no500_i04.b1 PHD_FILE: MSMg01no500_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:09 2005
(606 letters)
>mm_chr5_47393083_47394089
Length = 1007
Score = 793 bits (410), Expect = 0.0
Identities = 460/484 (95%), Gaps = 13/484 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtaattatactgaga-ttttttacttagggaatgaagtgctgttgccaggata 63
|||||||||||||| | ||||| |||||||||||||||||||||| || || ||||||||
Sbjct: 477 gaattctgtaattacagtgagatttttttacttagggaatgaagttctcttcccaggata 418
Query: 64 aagagagctagaaatcttttcgctgagaattttgctcaccttgagatgtataaaatattc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aagagagctagaaatcttttcgctgagaattttgctcaccttgagatgtataaaatattc 358
Query: 124 agccttggcttcattctacgttttaaatcaaggtgtgggatatatttagctttgctttct 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agccttggcttcattctatgttttaaatcaaggtgtgggatatatttagctttgctttct 298
Query: 184 cttgtttaaaatatggctgacatgagtgttacaacttgaagagtgtgaatagaaagaagt 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 297 cttgtttaaaatatggctgacatgagtgttacaacttgaagagtgtgactagaaagaagt 238
Query: 244 cagatatctggaaatgaaagactgcaatgagctatacttagtgcttctaagaatccagcc 303
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 237 cagatatctggaaatgaaagactgcaatga------------gcttctaagaatccagcc 190
Query: 304 attcttaaccaggcatggtggcaaacgcctttaatcccagcactctggaggcagcggtag 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 189 attcttaaccaggcatggtggcaaacgcctttaatcccagcactctggaggcagaggtag 130
Query: 364 gttgttttctgagttcgaggccagtctggtctatggagtgagttccaggacagccaaggc 423
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 129 gttgttttctgagttcgaggccagtctggtctatgaagtgagttccagaacagccaaggc 70
Query: 424 tacacagagaaacgctgtctttaaaaaccaaaccaaacaaacaaacaaacaaacaaaaaa 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 69 tacacagagaaacgctgtctttaaaaaccaaaacaaacaaacaaacaaacaaacaaaaaa 10
Query: 484 aaaa 487
||||
Sbjct: 9 aaaa 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space: 594212
Effective search space used: 594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_i04.g1 MSMg01no500_i04.g1 CHROMAT_FILE:
MSMg01no500_i04.g1 PHD_FILE: MSMg01no500_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:10 2005
(572 letters)
>mm_chr5_47343524_47344495
Length = 972
Score = 911 bits (471), Expect = 0.0
Identities = 501/511 (98%), Gaps = 2/511 (0%)
Strand = Plus / Plus
Query: 63 atatatatttatatattttgctattgctgaataacatttatagacagtaaggtatatttt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atatatatttatatattttgctattgctgaataacatttatagacagtaaggtatatttt 322
Query: 123 ataaattcaaaataatagtgtgatagtgtactctagactttgagaattcaatttactagt 182
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 ataaattcaaattaatagtgtgatagtgtactctagaatttgagaattcaatttactagt 382
Query: 183 caataagtatagaacagtcattatatcctatttgagagagttcatttgttgaagacacta 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 caataagtatacaacagtcattatatcctatttgagagagttcatttgttgaaaacacta 442
Query: 243 atcagatctgatatattagttttaagcctagagtaagtttcaaataggattttagaaaaa 302
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 agcagatctgatatattagttttaagcctagagtaagtttcaaatagaattttagaaaaa 502
Query: 303 tgtcctatattatatgttcatgagaaaaatatagtagccttatttccattttccttcaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtcctatattatatgttcatgagaaaaatatagtagccttatttccattttccttcaga 562
Query: 363 ggatgatcttggggtaggaaacttggtgaaagaatcaaagttttctttaaaatcatccct 422
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 563 ggatgatcttggggtaggaaacttggtgaaagaatcacagttttctttaaaatcatccct 622
Query: 423 tagtctttattttgctacagtttctgtttctaacaattagggggaaaaaagaaaagaaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 tagtctttattttgctacagtttctgtttctaacaattagggggaaaaa-gaaaagaaaa 681
Query: 483 ggaaaaccaaaccgaaccaaataaacaaacaaacaatgccccagcccaataaaaaa-cca 541
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 682 ggaaaaccaaactgaaccaaataaacaaacaaacaatgccccagcccaataaaaaaacca 741
Query: 542 ctgcttgcacaattccgtcagcctttgcaga 572
|||||||||||||||||||||||||||||||
Sbjct: 742 ctgcttgcacaattccgtcagcctttgcaga 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
