XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
AACTTCTTGCCAGCCTGCACAGCAAAGACTACACTGCCTCAAACAAACAC
ACATACACATACACACAGATAGACAGACAGACAGACACACACACACACAC
ACACACACCAAAACAAAAGCGAAACAAAAGAGTAGAAAACTCTAGAAGTG
TAGTTTTTGTAGTTCCTGATGCTTTGGCCTAATTTTCTAGACTTTTTAAT
ATTCATTTATTGTTTTTAATATTAATATACATTTTCTATGAAGAAACACA
GCAGCTAAGTAAAACTAAATGCACTTGTTCAGAACTGTGTATAAAATGTT
ACATGTAATCTTGTAATATACACTGGTAATGTAAAAATAATAAACCTCAG
GACCATACACCAATGATGCAAATAAGGAAAAGAACTTTACCAGATTAAAT
TAATAAATAATAAAGTTTCTACTGTAGGCTTTATAGAAGCTACCAAACAC
AATTATCTTGAACAATATTCTTAGTTGAAAGATTATTAAAATAATTTTGC
ATCTCTCTCAGTGAGAATGTGCTACTATTATAAGAACTTATTAAGGTTGG
TGTAAAAAAAGATATATTTGTTATTTAAACTTTGTGAAGTATTATTTCAA
TATGAAAATTGTTTAATGTTCCTCTTTGTGATGAGGGCAATAATCCCATA
CCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG
CGGAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT
CTCCTCAGAGATTACTGGCGGCACACATGCGATTGCTCGCAGCACGTACC
GGCTTTCCACACTTGTCAAAGATCAAGTGTGCATAAGTGTGTGGGTTTAT
TTCTGGGTCTTTGATTCTATTCCATTGATGATATGGGATTTGGGCTAACC
ATTATGCTTATGCTTTTCAGGTCTTGCTCTGGTGGGAGAAATTGGTTCTG
ATGGTGCCAAAGTATATTGGCTTTTATTTCTTAGGATCTTGGGCTTGCCT
CTCATCATCTGGTTATTTCTGGTATTAACTGACCTGGGTGTCTCTACCTG
GGGCCTGCCTCCTGTGTCTCTAAAATTTTGTTTGTTTTGGTTTGGTTTGG
TTTGGTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC
CTGAAACTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCTGCCT
GCCTCTGCCTCCGAAATGCTGGGGATAAAGCTGTGCACCACCACCGCCCT
GCTGTGTCCCTAGGTTTTAGCAGATCTCCTGGGAGACATGTGG

Query= MSMg01no500_i22.b1 MSMg01no500_i22.b1 CHROMAT_FILE:
MSMg01no500_i22.b1 PHD_FILE: MSMg01no500_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:13 2005
         (625 letters)



>mm_chr5_79320163_79321187
          Length = 1025

 Score = 1127 bits (583), Expect = 0.0
 Identities = 617/641 (96%), Gaps = 20/641 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcaaacttcttgccagcctgcacagcaaagactacactgcctcaaacaaacac 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gaattcttcaaacttcaggccagcctgcacagcaaagactacactgcctcaaacaaacac 244

                                                                       
Query: 65  acatacacatacacacagatagacagacagacag--------------------acacac 104
           ||||||||||||||||||||||||||||||||||                    ||||||
Sbjct: 245 acatacacatacacacagatagacagacagacagacagacagacagacacacacacacac 304

                                                                       
Query: 105 acacacacacacacacaccaaaacaaaagcgaaacaaaagagtagaaaactctagaagtg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 acacacacacacacacaccaaaacaaaagcgaaacaaaagagtagaaaactctagaagtg 364

                                                                       
Query: 165 tagtttttgtagttcctgatgctttggcctaattttctagactttttaatattcatttat 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tagtttttgtagttcctgatgctttggcctaattttctagactttttaatattcatttat 424

                                                                       
Query: 225 tgtttttaatattaatatacattttctatgaagaaacacagcagctaagtaaaactaaat 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tgtttttaatattaatatacattttctatgaagaaacacagcagctaagtaaaactaaat 484

                                                                       
Query: 285 gcacttgttcagaactgtgtataaaatgttacatgtaatcttgtaatatacactggtaat 344
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gcacttgttcagaaatgtgtataaaatgttacatgtaatcttgtaatatacactggtaat 544

                                                                       
Query: 345 gtaaaaataataaacctcaggaccatacaccaatgatgcaaataaggaaaagaactttac 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gtaaaaataataaacctcaggaccatacaccaatgatgcaaataaggaaaagaactttac 604

                                                                       
Query: 405 cagattaaattaataaataataaagtttctactgtaggctttatagaagctaccaaacac 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cagattaaattaataaataataaagtttctactgtaggctttatagaagctaccaaacac 664

                                                                       
Query: 465 aattatcttgaacaatattcttagttgaaagattattaaaataattttgcatctctctca 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aattatcttgaacaatattcttagttgaaagattattaaaataattttgcatctctctca 724

                                                                       
Query: 525 gtgagaatgtgctactattataagaacttattaaggttggtgtaaaaaaagatatatttg 584
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 725 gtgagaatgtgctactattataagaacttattaaggttggtgttaaaaaagatatatttg 784

                                                    
Query: 585 ttatttaaactttgtgaagtattatttcaatatgaaaattg 625
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttatttaaactttgtgaagtattatttcaatatgaaaattg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)