Query= MSMg01no500_k04.b1 MSMg01no500_k04.b1 CHROMAT_FILE:
MSMg01no500_k04.b1 PHD_FILE: MSMg01no500_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
(541 letters)
>mm_chr5_114626486_114627427
Length = 942
Score = 978 bits (506), Expect = 0.0
Identities = 531/544 (97%), Gaps = 10/544 (1%)
Strand = Plus / Plus
Query: 1 gcggtacacatttataatcctagcactgctgaggcaggaggattgagttaagaggccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcggtacacatttataatcctagcactgctgaggcaggaggattgagttaagaggccagc 260
Query: 61 ttgggctatataggaaaacccacacacgtaaagcc---ccccccccaaaaaaaaagccca 117
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 261 ttgggctatataggaaaacccacacacgtaaagcccctcccccccc--aaaaaaagccca 318
Query: 118 aatgaacaaactaaggaaattataaacacgaagaggagtaaagatataattccacctgga 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatgaacaaactaaggaaattataaacacgaagaggagtaaagatataattccacctgga 378
Query: 178 tcaacagctgatacttgacaaatcttgttttcagtgcagatgtttaatttataaaattga 237
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 tcaacagctgatacttgacaaatcttgttttcagagcagatgtttaatttataaaattga 438
Query: 238 accatatttattgtaacctattagtctttttaaaaaaatttattttatgtatttgaatgc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 accatatttattgtaacctattagtctttttaaaaaaatttattttatgtatttgaatgc 498
Query: 298 tctatctgcatatacacctgcatgccagaagagggcatcagatcccatttcagatggttg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctatctgcatatacacctgcatgccagaagagggcatcagatcccatttcagatggttg 558
Query: 358 tgagctaccatgtggttgctaggaattgaactcaaggtcaggttaggaaccagtgctctt 417
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 559 tgagctaccatgtggttgctaggaattgaactcaaggtcaggttaggagccagtgctctt 618
Query: 418 aaccgctgagtcatctctccagccctttttttttttttttttttttccttcttctttttc 477
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 619 aaccgctgagtcatctctccagccccttttttttttttttt-----ccttcttctttttc 673
Query: 478 ttttctttttcccaaattggctctgcaaattatgagtttatctgcatttatctggcctga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ttttctttttcccaaattggctctgcaaattatgagtttatctgcatttatctggcctga 733
Query: 538 gggc 541
||||
Sbjct: 734 gggc 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_k04.g1 MSMg01no500_k04.g1 CHROMAT_FILE:
MSMg01no500_k04.g1 PHD_FILE: MSMg01no500_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:18 2005
(238 letters)
>mm_chr5_114803535_114804171
Length = 637
Score = 319 bits (165), Expect = 8e-92
Identities = 219/239 (91%), Gaps = 11/239 (4%)
Strand = Plus / Minus
Query: 3 gcatcttcagtagcaaacagggttctggggaagcgaatgaatattttggttctagaagca 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 gcatcttcagtagcaaacagggttctggggaatcgaatgaatattttggttctagaagca 292
Query: 63 aaaagaaacataattattggctggccagctgccacccatgataggagaagctgccccccg 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct: 291 aaaagaaacataattattgactggccagctgccacccatgataggagaagctgtcccc-g 233
Query: 123 cacccaatcagaactttaga-ctgtgacctttgtgtgtgtgtgtgtgt-gtgttttagga 180
|||||||||||||||||||| | ||||||||||||| ||| ||||||| | | ||||
Sbjct: 232 cacccaatcagaactttagaac-gtgacctttgtgtttgtatgtgtgtag-g----agga 179
Query: 181 tgggtggctatctga-agatgtgcttacagtacagtagaggggagacagtaagttagag 238
| ||||||| ||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 178 taggtggctgtct-acagatgtgcttacagtatggtagaggggagacagtaagttagag 121
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 637
Length adjustment: 9
Effective length of query: 229
Effective length of database: 628
Effective search space: 143812
Effective search space used: 143812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
