BAC Information

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BAC

Clone NameMSMg01-500K15
Chromosome5 (Build37)
Map Location 126,984,906 - 126,985,416
singlet/doubletsinglet
Overlap genenone
Upstream geneAacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327, Tmem132c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500K15.T7 (MSMg01no500_k15.b1)MSMg01-500K15.TJ (MSMg01no500_k15.g1)
ACCAG576451AG576452
length1,149699
length of high quality
(start - end)		---509 (59 - 567)
definitionCHROMAT_FILE: MSMg01no500_k15.b1 PHD_FILE: MSMg01no500_k15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:20 2005CHROMAT_FILE: MSMg01no500_k15.g1 PHD_FILE: MSMg01no500_k15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTACTCCATCTACCGTGCCTGCCTAGCGGTGAGTTGGTGGCATGCCTCC
TAAATCGCGCAGCGGTAGACTTGTCCGCTTTCTCTCAAGAAGAATAGAAT
ATCTCTCACGTCCTTCTACTTTGCCGTCTGTTTCGCCGTCCTCTTTTAGC
ATCTCTTTTCACTCCACCCGTTTATCTTATCCGCGTTTCTCATATTTACC
CCGCTCACAATCATACTCTTCATCGGTATCGTAGTCGATACCAGTATGCC
CAACCAGACACGCAGTTTATACCGTATAGACGCGTTAGATTCTCGGCGCA
TTCGTTCGCGAACTTGGCGGAGTTGCGCCTATATGCTCTAGAAGACAGAA
TATGAATTATGTGACGAGCGGGCGCCGCGATATATCAAGATTCGCACGTG
GTAGACTATACGAAGCATCCATTTATTAACATCGTCTTAGTCGATTCAGC
TAGGAGACGGCGCGAAAGAGTACCATTAGTGTATTGTATGCAGGCGCGTG
CGTACCAGGAATGAAGACGACGTAAGACGACATAGCGATAGACTGGTAGG
TGGAGTTGGTTGGGGAGTAGTTGGGGTAGCACGCACACATGGCGAGCTTA
CGTTGCTGACGCACGATATGCGACACTACCGTCATGCAATCTGTAGCTAT
ATCCCGTATATCTTACCGTTGCGTACACGGATGCGGCCACAGACGCGTCA
GAGGGTGTTTGAGATATGTCGGGCGTTACGGTATATTTGTTGCCCTGATA
GAAACCACATCGCGTACGGTTCACGCAAAGCTACATCATACATATCCCCG
CCTCGTGCCCCTCGCCGCTGAAATCCATTCTACCACGCATCTTGCGCACC
ATGTAACGCTCGACTGCAAAACGAATAACGTCTTCCTAAAGATACAAGAT
TGTGGGTCATCAGCCCGCACCGCCCATCAACGATCACATACTAACAAATT
CGTCCAACTTCACGCAACTCGACGTTGAGTGCCGATCGATGGTAATTCTC
GTCCGCATTGCTTATTTCCTCGCTGTGTTACAAAAAGAATACACTTAGTC
GTTATNGCGTACTCGATTAGGGCTCTACACCGTGTCCACCCTCACTTATC
GGTATTGTGCTCTATAATNCAGCATGTCATATACGACAGAGAGTATCAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCATTCTTATATGTCACATTCTGACCACACTGTGAGGTCAC
AGCCATGACCTTTCTTCCTGTGCACACACTTGGAGAAACTTACCAGAGAT
GAGAAACAACCAATTGTCTGCATTCTCTGTTATGTGGTTGAAGAAAGAAT
AGTGTTTTGAGAGTAGCTACTTTGAACTAGCTACTTGCTATTATTTTATG
AGAATAGGGCTTATGGCCTACACCATCATCATGAGTGCCCCATCAGATGT
CCCTGATGGAGATTGTTGACTCTTGAGATACAACACAGCTGTAGACAGCA
TGTCTTTGAGTAAGCATGCCCTCCTCATCTCTTTCTCATCTCTCTCTCTC
TCTCTCTGCATACATATGTAATTTAGGATACTAGTGGGATATTAACCCCT
ATTATCACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACATACTCAGAGAGAGAGAGAGAGACAGACAGAGACAGAAGA
GAGATAGAGAGTTAAGCTGTAAGCAAAGTTTATGGGTGAGAACATATCTA
GTCTCGCCTGTTTAAAGTAACTAAGTATGGATCTATCTATAAACTTGAAA
GTTCCCAGAATCTGGTGGTGTAAATTTCAGTCCAAGTTAAAAACAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_k15.g1 MSMg01no500_k15.g1 CHROMAT_FILE:
MSMg01no500_k15.g1 PHD_FILE: MSMg01no500_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:20 2005
         (509 letters)



>mm_chr5_126984898_126985806
          Length = 909

 Score =  822 bits (425), Expect = 0.0
 Identities = 487/525 (92%), Gaps = 30/525 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccattcttatatgtcacattctgaccacactgtgaggtcacagccatgacctttcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tccattcttatatgtcacattctgaccacactgtgaggtcacagccatgacctttcttcc 460

                                                                       
Query: 61  tgtgcacacacttggagaaacttaccagagatgagaaacaaccaattgtctgcattctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgtgcacacacttggagaaacttaccagagatgagaaacaaccaattgtctgcattctct 400

                                                                       
Query: 121 gttatgtggttgaagaaagaatagtgttttgagagtagctactttgaactagctacttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gttatgtggttgaagaaagaatagtgttttgagagtagctactttgaactagctacttgc 340

                                                                       
Query: 181 tattattttatgagaatagggcttatggcctacaccatcatcatgagtgccccatcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tattattttatgagaatagggcttatggcctacaccatcatcatgagtgccccatcagat 280

                                                                       
Query: 241 gtccctgatggagattgttgactcttgagatacaacacagctgtagacagcatgtctttg 300
           |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 279 gtccctgatggaaattgttgactcttgagacacaacacagctgtagacagcatgcctttg 220

                                                                       
Query: 301 agtaagcatgccctcctcatctctttctcatctctctctctctctctc------------ 348
           ||||||||||| ||||||||||||||||||||||||||||||||||||            
Sbjct: 219 agtaagcatgctctcctcatctctttctcatctctctctctctctctctctctctctctt 160

                                                                       
Query: 349 tgcatacatatgtaatttaggatactagtgggatattaacccctattatcacacacacac 408
           ||||||||||||||||||||||||||| |||||||||||||||||||||           
Sbjct: 159 tgcatacatatgtaatttaggatactaatgggatattaacccctattat----------- 111

                                                                       
Query: 409 acacacacacacacacacacacacacacacacacacacacacacatactcagagagag-- 466
              |||||||| |||||||||||||||||||||||||||||||||||| |||||||||  
Sbjct: 110 ---cacacacatacacacacacacacacacacacacacacacacatacacagagagagac 54

                                                        
Query: 467 ag--agagagacagacagagacagaagagagatagagagttaagc 509
           ||  ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 53  agacagacagacagacagagacagaagagagatagagagttaagc 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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