BAC Information

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BAC

Clone NameMSMg01-500N04
Chromosome5 (Build37)
Map Location 32,175,515 - 32,176,110
singlet/doubletsinglet
Overlap geneBre
Upstream gene1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000
Downstream geneFosl2, LOC672217, Plb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500N04.T7 (MSMg01no500_n04.b1)MSMg01-500N04.TJ (MSMg01no500_n04.g1)
ACCAG576569AG576570
length653657
length of high quality
(start - end)
478 (61 - 538)600 (58 - 657)
definitionCHROMAT_FILE: MSMg01no500_n04.b1 PHD_FILE: MSMg01no500_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:32 2005CHROMAT_FILE: MSMg01no500_n04.g1 PHD_FILE: MSMg01no500_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTAGAGAGATTA
CCATTTCCACACACAGTGAAATAATTTTATAAAGAAAAAAGACTTAAAGA
GTTTTCTTCAAGTAAATGCTATTCTTTTGTTTGTTTTCTTTTTGTTTGTT
TTTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC
ACTTTGTAGAGCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCCCTGCC
TCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACCGCCTGGCGTAAATG
TTATTTTTATTCTCACAGAAATCTAAAAGTTGAAAAGCAACACACTTGCT
TCTATTGAGAACCAATTTAAAAGCCAAGTAGCAGTGTCACACCTTTAATC
CCAGCACCCAAGACACGGAGGCAGGTGGATCTCTATGAGTTATGGGTCAG
CCTAGTCTACAGAGCAAGTTCCAGGGCAGCCTGGGCCACCCAGAGAAACA
CTGTCTCAAAACAGAGAGGAAGGGAGGGAAGGAGGGAAGGAGGAAGGGAG
GATACGTTTTTTTTTTTCTTTCGCTCCCTCTATTCTTTTTTTTTCGGTCC
TGCTCTTTACTTTTCTCTTTCTTTTTTTTCTCGTTCTCGTTTTCACTCTT
ATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTCTCCTTTTTAGTGATTAATTGCTCATTCATCTATGCAACT
ACCTTTGCTTTCCAAAGAACTAAGAAAGAAAGGAGTCATTGCTCTGTGGA
AGGTGCAGACAGTACAGAAGTGAATTAAGGTATAGACATGTGATATTCTC
TTTGGGAGATGCAGTGGATCCCATGTGAGCAGCGTCAGACCTGTTTGAAT
GAGTTCATGTATCTGAAGAACTACTACGTAAACTCTTAGCTAGGAGGTTT
TTAGGGAAAAGAATGTAATAGAACCAGAACATGACAGTAAGTAGTTAACA
CATCCAAATACAGGATGGCTTCACCAGTGAACTTTGAATATTGTGATGTG
GAACCCAATGGAGCGGGACTCAGTGACAGACTTCAGACCCTCTTGCCCCT
CCCCTTGTTCTCACTGACTGGGTTATTCCTAGAGTGAGACTAGTGTGTGG
GTTTATTACAATGCAGGTCTCTGTCTCCTCCCCTGAGTCAGAATCCACAC
AAGGGTCTTCTCTGCTCACATAAAAAGACAATGCACTGATACCAAGGGTT
CAGGGCATTCCATGTCTGTGATTATCCTTTACCATTGCAAAATAATGGGC
TGGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_n04.g1 MSMg01no500_n04.g1 CHROMAT_FILE:
MSMg01no500_n04.g1 PHD_FILE: MSMg01no500_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:32 2005
         (600 letters)



>mm_chr5_32175315_32176314
          Length = 1000

 Score = 1100 bits (569), Expect = 0.0
 Identities = 590/599 (98%), Gaps = 6/599 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctcctttttagtgattaattgctcattcatctatgcaactacctttgctttccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctcctttttagtgattaattgctcattcatctatgcaactacctttgctttccaaag 260

                                                                       
Query: 61  aactaagaaagaaaggagtcattgctctgtggaaggtgcagacagtacagaagtgaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactaagaaagaaaggagtcattgctctgtggaaggtgcagacagtacagaagtgaatta 320

                                                                       
Query: 121 aggtatagacatgtgatattctctttgggagatgcagtggatcccatgtgagcagcgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtatagacatgtgatattctctttgggagatgcagtggatcccatgtgagcagcgtca 380

                                                                       
Query: 181 gacctgtttgaatgagttcatgtatctgaagaactactacgtaaactcttagctaggag- 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gacctgtttgaatgagttcatgtatctgaagaactactacgtaaactcttagctaggaga 440

                                                                       
Query: 240 g--tttttagggaaaagaatgtaatagaaccagaacatgacagtaagtagttaacacatc 297
           |  ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcatt---agggaaaagaatgtaatagaaccagaacatgacagtaagtagttaacacatc 497

                                                                       
Query: 298 caaatacaggatggcttcaccagtgaactttgaatattgtgatgtggaacccaatggagc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 caaatacaggatggcttcaccagtgaactttgaatattgtgatgtggaacccaatggagc 557

                                                                       
Query: 358 gggactcagtgacagacttcagaccctcttgcccctccccttgttctcactgactgggtt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gggactcagtgacagacttcagaccctcttgcccctccccttgttctcactgactgggtt 617

                                                                       
Query: 418 attcctagagtgagactagtgtgtgggtttattacaatgcaggtctctgtctcctcccct 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attcctagagtgagactagtgtgtgggtttattacaatgcaggtctctgtctcctcccct 677

                                                                       
Query: 478 gagtcagaatccacacaagggtcttctctgctcacataaaaagacaatgcactgatacca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagtcagaatccacacaagggtcttctctgctcacataaaaagacaatgcactgatacca 737

                                                                      
Query: 538 agggttcagggcattccatgtctgtgattatcctttaccattgcaaaataatgggctgg 596
           ||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 738 agggttcagggtatttcatgtctgtgattattctttaccattgcaaaataatgggctgg 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)