GACTCACTATAGTCAGAGGATGCGCGGAATTCCAGCACACTTTCCGATCC
TCGGGTGTCAGACTTTATCCCATGAGCTGGTGTGGTGACATCATCCCATG
AGCTGGTGTGATGACATCATCCGATGAGCTGTTGACATAGATGGAAGAAA
TGGGAGAAACACCACCATGTTTTTCTTGCCTCCCATGCTTTTGACCAGCT
TTGCTCCACCATGTCTCCCCACAATATACCGGGCCTTTTAAAACCCGGAG
CCCAAGTGAATCTTCCTCTGTCAGCTGGGCAACAGTTATGGTGATGGAAA
AATTCTGTGACATGGAGAATCACTGTCACCTCTGACAGGGAGTCTTCAGT
GCAGGTCCAACGCTTCAATAGCCGCTCTAGGTAAGCTGCCAGTCTGCTGG
AGAGGAAGCACAGGAAGTGGCTTGGTGATTTTTGAGTAGAAGGTGAGAGG
CGCATCCTTTGCTGCGATGCTCAATGGCCTGCCTCGGGAACTCCAGGAAC
ACCAGCCAGAGGATGCAACACCTTTCCCTCCACCCCAGGAAAGATGAGCA
AGTTGGCTCTGTTGCAGAGTGAGATGGCACAGTCCAGGGCCACATGTGCC
AGGGTGCCAGTCCAGGGTCAGATGGCAAAGTCCAGGGTCAAATGTGCCAG
AGTTCTATTCCAGGGTCAGATAGCACAGTCCAGGGTCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAGAACCTCTGGAAGGGCAGCCAGTGCCCTTAACCGCTGAGCCAT
CTCTCCAGCCCTGCTGGTGGAAAGATTTTAAAAAGAGATTTTTCTGAGGG
AGGCGATGATTCGGTGGACAGCCCTTTGGCTTCCTGAATCCCTTAAGGAC
AGGAGAATGCTGGCCTTTGCCATTCAGTCTTCAGTGCCCAGCATGCAACA
GGACATGAAGAGGCATCACAATGCTGGCACATGGAAGAGAGGAGTCAGAC
CAGCCATGGTGGTCACCACTGGGGTGCCCACTCCTGCCCCTTTGTCACCT
CCGGCAGACAAGCCATGCCACAACCGGCCCAGGAGGACCCAGTCATCCTG
AATCTCACTGGGTCACTTTTCTCCTTCAGCATGGAGCAGTTCTAGCTGCT
GCTGCTGGTGGTGGTGGTGGGGGGGCAACCCTACCTCAAAGGCTTTCTAA
AGCACACGAGTCTTGATAAGTTCCACTCGTGCCAAACCAAACCGAGCAAG
GTTCATTCAGCCAGGAGCAGTGTCGCTCAATCCAACTTCTAGCTTCAATG
AGCCAGCATGGCCTAACCTCAGCAGGGAGTTTTGTTTTGCAGAGTCAGGA
AGCCCAAAGGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA

Query= MSMg01no501_a09.b1 MSMg01no501_a09.b1 CHROMAT_FILE:
MSMg01no501_a09.b1 PHD_FILE: MSMg01no501_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:47 2005
         (567 letters)



>mm_chr5_112303510_112304479
          Length = 970

 Score =  975 bits (504), Expect = 0.0
 Identities = 539/554 (97%), Gaps = 7/554 (1%)
 Strand = Plus / Plus

                                                                       
Query: 19  atcccatgagctggtgtggtgacatcatcccatgagctggtgtgatgacatcatccgatg 78
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 219 atcccatgagctggtgtagtgacatcatcccatgagctggtgtgatgacatcatcagatg 278

                                                                       
Query: 79  agctgttgacatagatggaagaaatgggagaaacaccaccatgtttttcttgcctcccat 138
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agctgctgacatagatggaagaaatgggagaaacaccaccatgtttttcttgcctcccat 338

                                                                       
Query: 139 gcttttgaccagctttgctccaccatgtctccccacaatataccggg-----ccttttaa 193
           |||||||||| ||||||||||||||||||||||||||||||||||||       ||||||
Sbjct: 339 gcttttgaccggctttgctccaccatgtctccccacaatataccgggttttt--ttttaa 396

                                                                       
Query: 194 aacccggagcccaagtgaatcttcctctgtcagctgggcaacagttatggtgatggaaaa 253
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aacccagagcccaagtgaatcttcctctgtcagctgggcaacagttatggtgatggaaaa 456

                                                                       
Query: 254 attctgtgacatggagaatcactgtcacctctgacagggagtcttcagtgcaggtccaac 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attctgtgacatggagaatcactgtcacctctgacagggagtcttcagtgcaggtccaac 516

                                                                       
Query: 314 gcttcaatagccgctctaggtaagctgccagtctgctggagaggaagcacaggaagtggc 373
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gcttcaatagccgctctaggtgagctgccagtctgctggagaggaagcacaggaagtggc 576

                                                                       
Query: 374 ttggtgatttttgagtagaaggtgagaggcgcatcctttgctgcgatgctcaatggcctg 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttggtgatttttgagtagaaggtgagaggcgcatcctttgctgcgatgctcaatggcctg 636

                                                                       
Query: 434 cctcgggaactccaggaacaccagccagaggatgcaacacctttccctccaccccaggaa 493
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cctcgggaactccaggaacatcagccagaggatgcaacacctttccctccaccccaggaa 696

                                                                       
Query: 494 agatgagcaagttggctctgttgcagagtgagatggcacagtccagggccacatgtgcca 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agatgagcaagttggctctgttgcagagtgagatggcacagtccagggccacatgtgcca 756

                         
Query: 554 gggtgccagtccag 567
           || |||||||||||
Sbjct: 757 ggatgccagtccag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 970
Length adjustment: 10
Effective length of query: 557
Effective length of database: 960
Effective search space:   534720
Effective search space used:   534720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no501_a09.g1 MSMg01no501_a09.g1 CHROMAT_FILE:
MSMg01no501_a09.g1 PHD_FILE: MSMg01no501_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:47 2005
         (585 letters)



>mm_chr5_112485092_112486073
          Length = 982

 Score =  847 bits (438), Expect = 0.0
 Identities = 502/534 (94%), Gaps = 25/534 (4%)
 Strand = Plus / Minus

                                                                       
Query: 56  tgctggtggaaagattttaaaaagagatttttctgagggaggcgatgattcggtggacag 115
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 982 tgctggtggaaagattttaaaaagagatttttctgagggaggcgatggttcggtggacag 923

                                                                       
Query: 116 ccctttggcttcctgaatcccttaaggacaggagaatgctggcctttgccattcagtctt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ccctttggcttcctgaatcccttaaggacaggagaatgctggcctttgccattcagtctt 863

                                                                       
Query: 176 cagtgcccagcatgcaacaggacatgaagaggcatcacaatgctggcacatggaagagag 235
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 cagtgcccagcatacaacaggacatgaagaggcatcacaatgctggcacatggaagagag 803

                                                                       
Query: 236 gagtcagaccagccatggtggtcaccactggggtgcccactcctgcccctttgtcacctc 295
           |||| ||||||||||||||||              |||||||||||||||||||||||||
Sbjct: 802 gagtaagaccagccatggtgg--------------cccactcctgcccctttgtcacctc 757

                                                                       
Query: 296 cggcagacaagccatgccacaaccggcccaggaggacccagtcatcctgaatctcactgg 355
           |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 756 cggcagacaagccatgccacaaccagcccaggaggacccagtcatcctgaatcgcactgg 697

                                                                       
Query: 356 gtcacttttctccttcagcatggagcagttctagctgctgctgctggtggtggtggtggg 415
           ||||||||||||||||||||||||||||||||||||||||  | ||| || || || |||
Sbjct: 696 gtcacttttctccttcagcatggagcagttctagctgctg--g-tgg-gg-gg-gg-ggg 644

                                                                       
Query: 416 g-gggcaaccctacctcaaaggctttctaaagcacacgagtcttgataagttccactcgt 474
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 643 gcgggcaaccctacctcaaaggctttctaaagcacacgggtcttgataagttccactcgt 584

                                                                       
Query: 475 gccaaaccaaaccgagcaaggttcattcagccaggagcagtgtcgctcaatccaacttct 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gccaaaccaaaccgagcaaggttcattcagccaggagcagtgtcgctcaatccaacttct 524

                                                                 
Query: 535 a---gcttcaatgagccagcatggcctaacctcagcagggagttttgttttgca 585
           |   ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 actagcttcgatgagccagcatggcctaacctcagcagggagttttgttttgca 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 982
Length adjustment: 10
Effective length of query: 575
Effective length of database: 972
Effective search space:   558900
Effective search space used:   558900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)