Query= MSMg01no501_m04.b1 MSMg01no501_m04.b1 CHROMAT_FILE:
MSMg01no501_m04.b1 PHD_FILE: MSMg01no501_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:38 2005
(409 letters)
>mm_chr5_52466322_52467129
Length = 808
Score = 745 bits (385), Expect = 0.0
Identities = 403/409 (98%), Gaps = 1/409 (0%)
Strand = Plus / Minus
Query: 1 aagatgggaatagatgaccagcataacttaactgcttatgggtaactttgaatgtgtttc 60
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 608 aagacgggaatagatgaccagcatagcttaactgcttatgggtaactttgaatgtgtttc 549
Query: 61 agaacatgtctgctacctccttgcagagagaccaaacatccacgggcatccttcactgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agaacatgtctgctacctccttgcagagagaccaaacatccacgggcatccttcactgtc 489
Query: 121 aaggaacacttggttcttgaatgggtacacacccagtttcatctgagccactttagaagt 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aaagaacacttggttcttgaatgggtacacacccagtttcatctgagccactttagaagt 429
Query: 181 tggtggctttaataagatacttctatctatgacctttggttttgttttctgagagtaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggtggctttaataagatacttctatctatgacctttggttttgttttctgagagtaaag 369
Query: 241 gacaggcaattgtccttgtaggagtgttcacaatcacatggattaaacagctttggacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gacaggcaattgtccttgtaggagtgttcacaatcacatggattaaacagctttggacct 309
Query: 301 tgaatatactccaaatgtgacatttcaaggaaaagagaaagtctagaaagcagaagtcga 360
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tggacatactccaaatgtgacatttcaaggaaaagagaaagtctagaaagcagaagtcga 249
Query: 361 tggggtggggaaaatggggtgtggcaatatcaagaggcggaagacagtg 409
||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 248 tggggtggggaaa-tggggtgtggcaatatcaagaggcggaagacagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space: 319600
Effective search space used: 319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_m04.g1 MSMg01no501_m04.g1 CHROMAT_FILE:
MSMg01no501_m04.g1 PHD_FILE: MSMg01no501_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:39 2005
(678 letters)
>mm_chr5_52316584_52317661
Length = 1078
Score = 1241 bits (642), Expect = 0.0
Identities = 669/678 (98%)
Strand = Plus / Plus
Query: 1 tgtattggccatatagaataagcaacaggtgcaagaataaacacaatacacagaggcccg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tgtattggccatatagaataagcaacaggtgcaaaaataaacacaatacacagaggcccg 260
Query: 61 aatgtcatagagctagtattttctaaggggtatgcagatgagccatcaggtataagctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtcatagagctagtattttctaaggggtatgcagatgagccatcaggtataagctcg 320
Query: 121 ctaagtcatattagagataaaattaatgggtataactaaattatatgtgttacaaaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagtcatattagagataaaattaatgggtataactaaattatatgtgttacaaaacat 380
Query: 181 aacgactatgttttgctctctgtaaagtacagtatcattgcttttcaaaatctaaaatat 240
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 aacgactatattttgctctctgtatagtacagtatcattgcttttcaaaatctaaaatat 440
Query: 241 ttcttttttattatgcgattattcacaaaaacctaagaataactttccaggattgtggtt 300
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttttagatcatgcgattattcacaaaaacctaagaataactttccaggattgtggtt 500
Query: 301 tttacatctcatttttctatctgcattggaatgttaacatgtggacattttgataaccca 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttacatctcatttttctatttgcattggaatgttaacatgtggacattttgataaccca 560
Query: 361 attttgaagtatgttaatagaatggaaattgtccagaaaactgtaacatagaataatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttgaagtatgttaatagaatggaaattgtccagaaaactgtaacatagaataatata 620
Query: 421 taaatataagggtgggaaagtagatcttcttggagaaagtgactctgttacccatcaggg 480
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 taaatatgagggtgggaaagtagatcttcttggagaaactgactctgttacccatcaggg 680
Query: 481 gatggagaggatgaactctgggtcggacaaggcctgaatccatgatctggctccaccgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatggagaggatgaactctgggtcggacaaggcctgaatccatgatctggctccaccgct 740
Query: 541 gtgctgagatatttgccacatcttggtgaggttaacaaatgtacatgtgtttcaagctat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgctgagatatttgccacatcttggtgaggttaacaaatgtacatgtgtttcaagctat 800
Query: 601 tttattatttaatgtatatggccattttgctcacatacatgtctgtgcacctggtaccca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttattatttaatgtatatggccattttgctcacatacatgtctgtgcacctggtaccca 860
Query: 661 tagagaccaaaagagatg 678
||||||||||||||||||
Sbjct: 861 tagagaccaaaagagatg 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
