Query= MSMg01no501_n19.b1 MSMg01no501_n19.b1 CHROMAT_FILE:
MSMg01no501_n19.b1 PHD_FILE: MSMg01no501_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:46 2005
(631 letters)
>mm_chr5_62463452_62464483
Length = 1032
Score = 1137 bits (588), Expect = 0.0
Identities = 618/628 (98%), Gaps = 1/628 (0%)
Strand = Plus / Plus
Query: 5 gaattcactatctctatccaccgtttgaactgcaaaataacacaatgtaagacattgaag 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactatctccatccaccgtttgaactgcaaaataacacaatgtaagacattgaag 264
Query: 65 tcaaaactatgagagtaaacttttattgtttttaagtgtagcaggaacagtgggggcacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaaaactatgagagtaaacttttattgtttttaagtgtagcaggaacagtgggggcacc 324
Query: 125 tttacataaatgcctggggcatgcatctgcaaaatcatctccttcaggaggacctaattg 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tttacataaatgcctggggcatgcatctgcaaaaccatctccttcaggaggacctaattg 384
Query: 185 aggtctc-ctgagagagcaaggatctctgatgcagataatgccagccaatcggtaattcc 243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtctctctgagagagcaaggatctctgatgcagataatgccagccaatcggtaattcc 444
Query: 244 tatttagaagagaagctctcttggaaccaatatgggcaggtgcagggtattaaaggagct 303
|||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 445 tatttagacgagaagctctcttgggaccaatgtgggcaggtgcagggtattaaaggagct 504
Query: 304 tgcaacagtgttcagatgagtttgctatggatttctcacctgctccaggagtctgtgtct 363
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcaacagtgttcagttgagtttgctatggatttctcacctgctccaggagtctgtgtct 564
Query: 364 tgaccttatcccacctcacctccaacccccaagggcaggaagtgtccagcagtgcacagg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaccttatcccacctcacctccaacccccaagggcaggaagtgtccagcagtgcacagg 624
Query: 424 aagcatttaagatatattttatggtatttaagacacatatttctcagagaagtcattaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcatttaagatatattttatggtatttaagacacatatttctcagagaagtcattaag 684
Query: 484 aatgacacaacatctggatactatctttttcaatgggtatttttataaatcattaggttt 543
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatggcacaacatctgaatactatctttttcaatgggtatttttataaatcattaggttt 744
Query: 544 taatggatgctctgaaggtaaatgaactatacccagcatctactacatcaagtcaatgaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taatggatgctctgaaggtaaatgaactatacccagcatctactacatcaagtcaatgaa 804
Query: 604 gtattattctgcttcattcaatatgtga 631
|||| |||||||||||||||||||||||
Sbjct: 805 gtataattctgcttcattcaatatgtga 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_n19.g1 MSMg01no501_n19.g1 CHROMAT_FILE:
MSMg01no501_n19.g1 PHD_FILE: MSMg01no501_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:46 2005
(561 letters)
>mm_chr5_62643983_62644943
Length = 961
Score = 766 bits (396), Expect = 0.0
Identities = 408/412 (99%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 1 tgtttacttagtgactgccaagttgaatccattaatgaaataattcattgtatgtatgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgtttacttagtgactgccaagttgaatccattaatgaaataattcattgtatgtatgta 737
Query: 61 ttttaaaacggtaatgataatcacatggctagggtgaaaaaatcttaaaatgataaacta 120
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 736 ttttaaaacagtaatgataatcacatggctagggtg-aaaaatcttaaaatgataaacta 678
Query: 121 tcaacttatcaagaaataagtataaaatacaaacatattatttcataaatatataaatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tcaacttatcaagaaataagtataaaatacaaacatattatttcataaatatataaatat 618
Query: 181 tttatgtattggttagcaaagtgggggaatcttcctggaggaatatttcttctcactttc 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 617 tttatgtattggttagcaaagtgggggaatcttcatggaggaatatttcttctcactttc 558
Query: 241 tcagcaattctttgtcattgtccagtttgaggaccccatgagattttactgctttcatat 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcagcaattcttagtcattgtccagtttgaggaccccatgagattttactgctttcatat 498
Query: 301 tattatatctgtttgtgtcatccaggtgtacacacatacacattcctaaatacttaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tattatatctgtttgtgtcatccaggtgtacacacatacacattcctaaatacttaaata 438
Query: 361 caacttctgaattttgtataagaatttatgtttaaacacttgaaaagtatct 412
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caacttctgaattttgtataagaatttatgtttaaacacttgaaaagtatct 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
