BAC Information

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BAC

Clone NameMSMg01-502A22
Chromosome5 (Build37)
Map Location 111,909,845 - 112,048,171
singlet/doubletdoublet
Overlap genenone
Upstream geneGalnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2, Ttc28, Pitpnb, Mn1
Downstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502A22.T7 (MSMg01no502_a22.b1)MSMg01-502A22.TJ (MSMg01no502_a22.g1)
ACCAG577504AG577505
length760757
length of high quality
(start - end)		595 (20 - 614)527 (60 - 586)
definitionCHROMAT_FILE: MSMg01no502_a22.b1 PHD_FILE: MSMg01no502_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:00 2005CHROMAT_FILE: MSMg01no502_a22.g1 PHD_FILE: MSMg01no502_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,909,845 - 111,910,432)(112,047,645 - 112,048,171)
sequence
GACTCACTATATTCAGAGGATCCGCGGAATTCACCTGTATTACTCTCTTT
CCATCCACTGAAGAGCTTTCGTTTCCAGGTATCTATGTAAAGTAGGAGGG
GATTGGGTCCATCTGGTCTACAGTGAAGTGCAGTAGGCTGACCCTATGCC
CCTCCTACAACCACATCCCACCCCAGACCCACACAGGCCACTCACAAGAA
ATCCCTCCTAGGACCCGGTTCCAGATGCTGGTCTACAAGGTCAGCTTGGC
GCTGCTATCTTTAACAGCTTCTGACAGGACAAGGAGAGGGGGTAGCATTA
GACTCAGCTCAGCAGGACAGTGCGCGGGTCGGGGCAGTGCGCCTGCTTCT
CCCATCTTCTGTAAGGTCTCCGCTTCTCCTTCCTTTTGTTCTTTTTTTGG
GGGTAGGGGTTCATGTAGCCCGGGCTGACCTTTAACTCACTGTGTAGTCC
AGAATGATCTTACACTTCCGATCCTCCTGCTTCCGCCTTTCCATGTACCA
CTGTGCCAGGTTTATGCATTACTGGAGATTGAACTCAGGGTTGCAGGCAT
ACAGGCAAGAGTTCTACCCACTGGCCTACACCCCCACAAGCTACGTCCCC
ATTGGGGCTGTGCCCCACAGAGCCACGCCCCCACTGGGCCATGCGCCGCC
TAGTCACGCCCTACAGAAACTCGGCCTCATGGGTCACGCCGCCATGGGGC
ACGAACCCCTTTATTTGGGCGCGGTGGGTGGCCTTCCCCATTTTTCTTTC
AAGAAATTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAACCCTATAAACAAAAACCCCATGATGAAACAGACTCTAA
TAAGGTCCTGCGTTGTGCCTACCAAATGACCACAAGGAAACAGCTCAACC
ACCAGGCCTGTCGTTAGCAGTGGGCAGAACAATGGGTTCTCTCAAACCCA
TGTGGCTGAGGTGCCACATGGGCCTCGCTCACTGAGCGTGGTCTAGAAAG
TCCATCCACCTGTGGACCATGGTGCTTTGCTGGGAACAGGGTGCAGGGAC
ATGGGGTCCATGACTAACACCCCCACCCACCCACACACACACACTTGTCT
GAAACAGTGGAAGTCACACATGCTGTAAGAATCATGTCCAGGGTGCTGGC
TGCAGCAGCCCTGATCCTGTGGAACCCTGTGGGTGGAATGAGCTGGGTCT
GTAGGTCAGGCCAGAAAAGTGCACACCGTGAACTCTCTGCCTCTCTGATG
CTTCACCTGACGGCCACAAGCCCTCAGCTTGGATGAGGGAGGGTAAGCCA
GGCTAACAACCACATCTGGGAGACCCACGATGTCCCAAGGAAATATTTAA
CTTATTTCAGCCAAGTTGGGTAATGGGCTTGCTCACCCCAGTGTGACTCC
ACCTCANTGCTGGGCAGTGCTCGTGGGGAGAAAGATGTGGCTCTAAGGCA
TTCTTGTCCTTTCTACAGAAGCACCTGCTGCTGGGATACAGGAGCATGTA
GCACGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_a22.b1 MSMg01no502_a22.b1 CHROMAT_FILE:
MSMg01no502_a22.b1 PHD_FILE: MSMg01no502_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:00 2005
         (595 letters)



>mm_chr5_111909638_111910632
          Length = 995

 Score = 1075 bits (556), Expect = 0.0
 Identities = 580/588 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcacctgtattactctctttccatccactgaagagctttcgtttccaggtatctat 67
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 208 gaattcacctgtagtactctctttccatccactgaagagctttcgttttcaggtatctat 267

                                                                       
Query: 68  gtaaagtaggaggggattgggtccatctggtctacagtgaagtgcagtaggctgacccta 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gtaaagtaggaggggattgggtccatctggtctacagtgaagtgcagtaggctgacccta 327

                                                                       
Query: 128 tgcccctcctacaaccacatcccaccccagacccacacaggccactcacaagaaatccct 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgcccctcctacaaccacatcccaccccagacccacacaggccactcacaagaaatccct 387

                                                                       
Query: 188 cctaggacccggttccagatgctggtctacaaggtcagcttggcgctgctatctttaaca 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctaggacccggttccagatgctggtctacaaggtcagcttggcgctgctatctttaaca 447

                                                                       
Query: 248 gcttctgacaggacaaggagagggggtagcattagactcagctcagcaggacagtgcgcg 307
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 448 gcttctgacaggacaaggagagggggtagcattaggctccgctcagcaggacagtgcgcg 507

                                                                       
Query: 308 ggtcggggcagtgcgcctgcttctcccatcttctgtaaggtctccgcttctccttccttt 367
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 508 ggtcggggcagtgcacctgcttctcccatcttttgtaaggtctccgcttctccttccttt 567

                                                                       
Query: 368 tgttctttttttgggggtaggggttcatgtagcccgggctgacctttaactcactgtgta 427
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgttctttttttggggataggggttcatgtagcccgggctgacctttaactcactgtgta 627

                                                                       
Query: 428 gtccagaatgatcttacacttccgatcctcctgcttccgcctttccatgtaccactgtgc 487
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtccagaatgatcttgcacttccgatcctcctgcttccgcctttccatgtaccactgtgc 687

                                                                       
Query: 488 caggtttatgcattactggagattgaactcagggttgcaggcatacaggcaagagttcta 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caggtttatgcattactggagattgaactcagggttgcaggcatacaggcaagagttcta 747

                                                           
Query: 548 cccactggcctacacccccacaagctacgtccccattggggctgtgcc 595
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cccactggcctacacccccacaagctacgtccccattggggctgtgcc 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no502_a22.g1 MSMg01no502_a22.g1 CHROMAT_FILE:
MSMg01no502_a22.g1 PHD_FILE: MSMg01no502_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:00 2005
         (527 letters)



>mm_chr5_112047445_112048371
          Length = 927

 Score = 1004 bits (519), Expect = 0.0
 Identities = 525/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaccctataaacaaaaaccccatgatgaaacagactctaataaggtcctgcgttgtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 caaccctataaacaaaaaccccatgatgaaacagactctaataaggtcctgcgttgtgcc 668

                                                                       
Query: 61  taccaaatgaccacaaggaaacagctcaaccaccaggcctgtcgttagcagtgggcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 taccaaatgaccacaaggaaacagctcaaccaccaggcctgtcgttagcagtgggcagaa 608

                                                                       
Query: 121 caatgggttctctcaaacccatgtggctgaggtgccacatgggcctcgctcactgagcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 caatgggttctctcaaacccatgtggctgaggtgccacatgggcctcgctcactgagcgt 548

                                                                       
Query: 181 ggtctagaaagtccatccacctgtggaccatggtgctttgctgggaacagggtgcaggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ggtctagaaagtccatccacctgtggaccatggtgctttgctgggaacagggtgcaggga 488

                                                                       
Query: 241 catggggtccatgactaacacccccacccacccacacacacacacttgtctgaaacagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catggggtccatgactaacacccccacccacccacacacacacacttgtctgaaacagtg 428

                                                                       
Query: 301 gaagtcacacatgctgtaagaatcatgtccagggtgctggctgcagcagccctgatcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaagtcacacatgctgtaagaatcatgtccagggtgctggctgcagcagccctgatcctg 368

                                                                       
Query: 361 tggaaccctgtgggtggaatgagctgggtctgtaggtcaggccagaaaagtgcacaccgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 367 tggaaccctgtgggtggaatgagctgggtctgtaggtcaggccagaaaagtacacactgt 308

                                                                       
Query: 421 gaactctctgcctctctgatgcttcacctgacggccacaagccctcagcttggatgaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaactctctgcctctctgatgcttcacctgacggccacaagccctcagcttggatgaggg 248

                                                          
Query: 481 agggtaagccaggctaacaaccacatctgggagacccacgatgtccc 527
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agggtaagccaggctaacaaccacatctgggagacccacgatgtccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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