Query= MSMg01no502_e19.b1 MSMg01no502_e19.b1 CHROMAT_FILE:
MSMg01no502_e19.b1 PHD_FILE: MSMg01no502_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:18 2005
(589 letters)
>mm_chr5_143660193_143661181
Length = 989
Score = 1098 bits (568), Expect = 0.0
Identities = 580/584 (99%)
Strand = Plus / Plus
Query: 6 aattcaaggccttcctggtctacatagtttcaagctagccaaagctacaaagtaagaccc 65
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcaaggccagcctggtctacatagtttcaagctagccaaagctacaaagtaagaccc 265
Query: 66 tgtctcaaaaacacttttttaaaaatcacttccaggagccctatgtggtagctcacacct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgtctcaaaaacacttttttaaaaatcacttccaggagccctatgtggtagctcacacct 325
Query: 126 ttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaagccagcctggt 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaagccagcctggt 385
Query: 186 ctacaaagtgagttccaggacagcgagggctacacagagaaaccctgtctcgagaaaaaa 245
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 ctacaaagtgagttccaggacagcaagggctacacagagaaaccctgtctcgagaaaaaa 445
Query: 246 aaaatcacgtccaggatgaagagattgctcagtagttgagagagtgtgtgctgaagttcc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaaatcacgtccaggatgaagagattgctcagtagttgagagagtgtgtgctgaagttcc 505
Query: 306 agagaacctgagtttggtaccaggcaagacatcctcagacccctgcacatgcctatgtct 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 506 agagaacctgagtttggtaccaggcaagacatcctcagacccctgcacatgcctgtgtct 565
Query: 366 aaacacacacagacaaacattcacacgggtatggatgtcttgcctgcatgtgtatctgtg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaacacacacagacaaacattcacacgggtatggatgtcttgcctgcatgtgtatctgtg 625
Query: 426 tatcacatgcatgtagtgcctacagagctcagaagatggtgtcagatcccctgggactgg 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tatcacatgcatgtagtgcctacagagctcagaagatggtgtcagatcccctgggactgg 685
Query: 486 agtactggacagctgtgatcgaccatgtgggactcaaacctgagccgccttctgcaaaag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agtactggacagctgtgatcgaccatgtgggactcaaacctgagccgccttctgcaaaag 745
Query: 546 cagccagtgctctttaactgctgaatcatggcttccagccccaa 589
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cagccagtgctctttaactgctgaatcatggcttccagccccaa 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_e19.g1 MSMg01no502_e19.g1 CHROMAT_FILE:
MSMg01no502_e19.g1 PHD_FILE: MSMg01no502_e19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:18 2005
(603 letters)
>mm_chr5_143823913_143824918
Length = 1006
Score = 992 bits (513), Expect = 0.0
Identities = 521/525 (99%), Gaps = 3/525 (0%)
Strand = Plus / Minus
Query: 82 tcaggaagcaaatgtctcatcactcacctgggattttaaaattgggttcagaacactcat 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 tcaggaagcaaatgtctcatcactcacctgggattttaaaattgggttcagaacactcat 947
Query: 142 ttcaccagcttttggtctgcagcaacataaagggagaggtaggtctgggttttgttttaa 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ttcaccagcttttggtctgcagcaacataaagggagaggtaggtctgggttttgttttaa 887
Query: 202 gacagggacactatatacccaaaaatggccttgaactcacctcagcctcccagtgctagg 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 gacagggacactatatacccaaaaatggccttgaactcacctcagcctcccagtgctagg 827
Query: 262 attataggcctgtattaacagaattaatgaggaggaagactttacaactccctggactag 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 attataggcctgtattaacagaattaatgaggaggaagactttacaactccctggactag 767
Query: 322 gcatattattgcttagtagtaaaatgcttccccagtacaggtgagcctgcaggttcagtc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 766 gcatattattgcttagtagtaaaatgcttccccagtacaggtgagcctgcaggttcaatc 707
Query: 382 tcccaacaccataaaagggaaaagaaaggaaaggtagacacgattcctaccccactaccc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tcccaacaccataaaagggaaaagaaaggaaaggtagacacgattcctaccccactaccc 647
Query: 442 ccaccaacccaaattaccctggctccaagaaggccccatatgcccagggacagctttatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ccaccaacccaaattaccctggctccaagaaggccccatatgcccagggacagctttatc 587
Query: 502 ctgaggaaggctgcctgtgggctgctgctgtcacttgtagtctttgtcctgtccacagct 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctgaggaaggctgcctgtgggctgctgctgtcacttgtagtctttgtcctgtccacagct 527
Query: 562 ctgctgtgccctc---tcttcttgcattgctcattgctttcattg 603
||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 526 ctgctgtgccctctcttcttcttgcattgctcattgctttcattg 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space: 590628
Effective search space used: 590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
