BAC Information

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BAC

Clone NameMSMg01-502K02
Chromosome5 (Build37)
Map Location 48,006,873 - 48,007,014
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502K02.T7 (MSMg01no502_k02.b1)MSMg01-502K02.TJ (MSMg01no502_k02.g1)
ACCAG577939AG577940
length743779
length of high quality
(start - end)
241 (75 - 315)142 (72 - 213)
definitionCHROMAT_FILE: MSMg01no502_k02.b1 PHD_FILE: MSMg01no502_k02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:43 2005CHROMAT_FILE: MSMg01no502_k02.g1 PHD_FILE: MSMg01no502_k02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGAGAAGATCCGCGGA
ATTCTTTTTTTTTCTTAATTATGAGGTATTTTCTTCATTTACATTTTCAG
TGCTAGCCCAAAAGTCCACCATACTCCCCCCCAGCCACTCCCCTACCCAC
CCACTCCCACTTCTTGGCCCTGGTGTTCCCCTATACTGAGGCATATAAAG
TTTGCACAACCAATGGGCCTCTCTTTTCACTGATGGCTGACTAGGCCATC
TTCTGATACATTTGCAGCTAGAGACATGAGCTCCAGGGGGTACTGGTTAG
TTCATAATGTTGTTCTATTTATAGGGTTGCAGATCCCTTTAGCTCCTTGG
GTACTTTCTCTAGCTCCTCCATTGAGGGTCCTGTGATCCATCCAATAGCT
AGCTGAGAGCATCCACTTCTGTGTTTGCTAGGCCCCAGCATAGTCTCACA
AGACACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCA
ATGGTGTCAGCATTTGGAGGCTGATTATGGGATGGATTCCCAGATATGGC
AGTCTCTAGATGGTTCTTCCTTTTGTCTCAGAGCCAAACTTTGTCTCTAT
AACTCCTGCCAAGGGTGTAGTGTTCCCAATTCTAAGAAGGGGCAAAGTGT
CCACACTTTGGTCTTCGTTCTTTTTGAGTTTCGTGAGTTTCAGAAATTGT
ATCTTAAATCTTGGATATTCTAAGTCTCTGGGCTAAATTCCAC
CATGAAATGNNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTTTTCTCTTATTAACATAAAGTAACT
CTTTCTAGTTCTTTTTTACTTGCTATAATTTGTTCTTTTCTAAATTTCCA
TTTTGTGTTCTTCATTCACAAATATACTTCAACATGTGTATGGGGAATGA
CTAACTGGAAGCTAGCAAGACGATGAACCAGTAAGAATATTTGTGNGTGA
GAGGGACAGTGCTTACAAAGACAATNNAANNGTTGGTTGTGTAAAAAAAA
AAAAATGAAAAAAAAAATTTAAAATAAAAAAAAAAAGAAAGGGGGAGAGG
AGGGAAGGAGGGGGGGGGGGGTTNANTNNAANTTTTTTTAANTTCCCCAA
ATTNTTTTTAAAAAATTTCCCCTTTTTCTTNTTTTTTTTTATTTCCTTNT
ANTTTTTTTTNNNNNTTTTCTTTNAATTTTAACCTTTTCTTANNNTNATT
TTTCTTTTTTTTTTTTTTNNTTATTTTCCAAATTTTTTTTAAAAATTTTT
TTTCTTTTTTTNNTANTTCCTTTTTTTTCTTTNTTTCTTTTCCCCTTTTT
TTTTTCATCTCTTTTTTTTTTCCCCTTTTTTTTTTCTTTTTNNNTTTTCT
CTTTTTTTTTTCCTTTTCTTTTTTNTTTTTCTTTTCTCCCTTTTTTTCTT
TTTTNTTNNTNNTTTCCNTTTTTTTTTCCTTTCTTTTTTTNTCCTTTTTT
TTTTCTTTCCCTTACCTATCTCGCGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_k02.g1 MSMg01no502_k02.g1 CHROMAT_FILE:
MSMg01no502_k02.g1 PHD_FILE: MSMg01no502_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:43 2005
         (142 letters)



>mm_chr5_48006673_48007214
          Length = 542

 Score =  267 bits (138), Expect = 2e-76
 Identities = 141/142 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttttctcttattaacataaagtaactctttctagttcttttttacttgctataattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atgttttctcttattaacataaagtaactctttctagttcttttttacttgctataattt 283

                                                                       
Query: 61  gttcttttctaaatttccattttgtgttcttcattcacaaatatacttcaacatgtgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gttcttttctaaatttccattttgtgttcttcattcacaaatatacttcaacatgtgtat 223

                                 
Query: 121 ggggaatgactaactggaagct 142
            |||||||||||||||||||||
Sbjct: 222 tgggaatgactaactggaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)