Query= MSMg01no502_p11.b1 MSMg01no502_p11.b1 CHROMAT_FILE:
MSMg01no502_p11.b1 PHD_FILE: MSMg01no502_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
(381 letters)
>mm_chr5_93167026_93167806
Length = 781
Score = 586 bits (303), Expect = e-172
Identities = 312/315 (99%)
Strand = Plus / Minus
Query: 67 cccaacaaccacaggaaggttcacaactatctgtacagctacggtgcacttacatacata 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cccaacaaccacaggaaggttcacaactatctgtacagctacggtgcacttacatacata 722
Query: 127 aaataaatagataaatcttgaaagaaaaaaaaagagaggagactcagaagctagggttct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaataaatagataaatcttgaaagaaaaaaaaagagaggagactcagaagctagggttct 662
Query: 187 tggttcaaagttagactctgttccttaagagctgtgtaactctgggcaccttgtttcact 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 661 tggttcaaagttagactctgttccttaagagctgtgtaactctgggcaccttgtttcatt 602
Query: 247 tttctaagcctcattttctctggaagtttgatttctattttctttatattattattgtga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttctaagcctcattttctctggaagtttgatttctattttctttatattattattgtga 542
Query: 307 cattcatataaatacatatcctaatgaaagcacagacatatgtggattagggtagcacct 366
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 541 cattcatataaatacatatccaaatgaaagcacggacatatgtggattagggtagcacct 482
Query: 367 gatatatcatagtct 381
|||||||||||||||
Sbjct: 481 gatatatcatagtct 467
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_p11.g1 MSMg01no502_p11.g1 CHROMAT_FILE:
MSMg01no502_p11.g1 PHD_FILE: MSMg01no502_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:07 2005
(636 letters)
>mm_chr5_93028363_93029398
Length = 1036
Score = 1137 bits (588), Expect = 0.0
Identities = 624/640 (97%), Gaps = 8/640 (1%)
Strand = Plus / Plus
Query: 1 tgagccgcggggagcactgccaagctttagggaagactttgagcacggttaagccaagaa 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tgagccgcggggagcactgccaagctttagggaagactttgagcagggttaagccaagaa 260
Query: 61 gagttacagaatgcagtggagcctaaatagacggaggtactcagatgaggttcgaacagg 120
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttgcagagtgcagtggagcctaaatagacggaggtactcagatgaggttcgaacagg 320
Query: 121 gtacagacactgagaccaataacacagagggcggtggaaagggaggtttactctgtccca 180
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 gtacagacactgaaaccaataacacagagggtggtggaaagggaggtttactctgtccca 380
Query: 181 ctcttaaacacctctctccagggagagagctggtaagtagggagaggttttgcacactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttaaacacctctctccagggagagagctggtaagtagggagaggttttgcacactaa 440
Query: 241 ----ttttttcttaaattcacaggatatcaactcgatgtcctcccttttaacacagttct 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaatt----cttaaattcacaggatatcaactcgatgtcctcccttttaacacagttct 496
Query: 297 gacactctaccccgagtcagttttgatctcatacgttaaaggactcagtttaagattctc 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 497 gacactctaccccgagtcagttttgatctcatacgttaaagaactcagtttaagattctc 556
Query: 357 cccatttcaacaatcaatcccaagttcatgagttttctgcttctattggctgatgaactt 416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cccatttcaacaatcaatcgcaagttcatgagttttctgcttctattggctgatgaactt 616
Query: 417 ccaggatccaacaaccatttccttgggtttcatggtttgctagaattcaaggaaacatca 476
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 617 ccaggatccaacaaccatttccttgggtttcatgatttgctagaattcaaggaaacatca 676
Query: 477 ttctaattttctttcatctatatctttctgactatccacctacctatcttctttttggga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttctaattttctttcatctatatctttctgactatccacctacctatcttctttttggga 736
Query: 537 atcatgaattcacagaactcaaggaaaccatgggtttatgctcactggattataatggaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atcatgaattcacagaactcaaggaaaccatgggtttatgctcactggattataatggaa 796
Query: 597 ggtatgcgctatggtttggatattccaaactgtatatggt 636
||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggtatgcgctatggtttggatattccaaactgtatatggt 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
