BAC Information

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BAC

Clone NameMSMg01-502P15
Chromosome5 (Build37)
Map Location 15,417,796 - 15,418,431
singlet/doubletsinglet
Overlap genenone
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502P15.T7 (MSMg01no502_p15.b1)MSMg01-502P15.TJ (MSMg01no502_p15.g1)
ACCAG578202AG578203
length741757
length of high quality
(start - end)
394 (317 - 710)636 (73 - 708)
definitionCHROMAT_FILE: MSMg01no502_p15.b1 PHD_FILE: MSMg01no502_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:08 2005CHROMAT_FILE: MSMg01no502_p15.g1 PHD_FILE: MSMg01no502_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTTCACTATTCGATATAATGGGCNGGAATCNNNGT
TTTGCTCAAAAAGCCATTTNNNAANGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAATGATCCTTTCCCAAATAAACTCAAACAAGTCAATGGCCT
TTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTATGTAAACAACA
CCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGCGTGACTCTAAC
TAAGGAATNGATAGATCTGTATGATAAAAACTTCAAATCTCTGAAGAAAG
AAATTAAAGAAGATCTCAGAAGATGGAAGGATCTCCCATGTTCATGGATT
GGCAGGATCAACATTGTAAAAATGACTATCTTGCCAAAAGCAATCTACAG
ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAG
AAGGAGCAATTTGCAAATTTGTCTGGAATAACAAAAAACCTAGGATAGCA
AAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGA
CCTAAAGCTTTATTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGT
ATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATG
AACCCACACACCTATGGTCACTTGATCTTCCACAAGTGAGN
CGATGCTGTGGGAGGCCTGGNGGCCGCCTGTTTTCAAAATTGGGGTGAAC
TATAGAAGTTTCGCAGAAAGCGTGGGCTTTAACGCATCCTGTACTTGTTT
GGACAGAAGAAGAATCACTGTAATTTTAAAAGAATGAGCAAGTCAAATAA
ATGGTGAATACCTCAGAGACACACTTAGAAATGAGATCGAGAGTCTCAGA
TAATTCTATGAGTGCATTGTTCAGTCACTGTCAGCTTTAAGCTGCAAAAG
GACACAATACAATTCTTGTAAAACCTATTAATACATATGTATGTGCCAAA
TGAAAAATTATGGATATTATATAAGGACTGTACAGTCATCCAAGCAAAGA
CAAGAATGGTTCTCACAGCAGTAACAGCAAAAGATGGATAACAATCATTT
TGAGTATATTTTAAATTTAAAGACATTGAAATTTGCTGGGACAAACTACT
AGGCTAAGACTTAGTTAGATTGATAGCAAAGACTTTGAGCTGAACAAGTG
AGTAAAGTGAATATTTATTGAGATAGAAAATGCAAGAATACTGGACTGCT
CAGAGGAAGAGCACTAGAACATTTAATTAGCATGTATCAGGAATGCCATG
GTTGAATCCACAGCACTGAAATGGGGAAATGATGCAATTATATTATAAAC
ATATACATGAAATTGCAGGAACAGGCTTGAAGTAAGCAAGAGATTAATAT
GTCTGATGTCAGTGTGATAGTTTGGAGAAATAGGTTAATTTTGACTTTTT
TATTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_p15.g1 MSMg01no502_p15.g1 CHROMAT_FILE:
MSMg01no502_p15.g1 PHD_FILE: MSMg01no502_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:08 2005
         (636 letters)



>mm_chr5_15417596_15418631
          Length = 1036

 Score = 1168 bits (604), Expect = 0.0
 Identities = 628/636 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggctttaacgcatcctgtacttgtttggacagaagaagaatcactgtaattttaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tgggctttaacgcatcctgtacttgtttggacagaagaagaatcactgtaattttaaaag 777

                                                                       
Query: 61  aatgagcaagtcaaataaatggtgaatacctcagagacacacttagaaatgagatcgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 aatgagcaagtcaaataaatggtgaatacctcagagacacacttagaaatgagatcgaga 717

                                                                       
Query: 121 gtctcagataattctatgagtgcattgttcagtcactgtcagctttaagctgcaaaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gtctcagataattctatgagtgcattgttcagtcactgtcagctttaagctgcaaaagga 657

                                                                       
Query: 181 cacaatacaattcttgtaaaacctattaatacatatgtatgtgccaaatgaaaaattatg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 656 cacaatacaattcttgtaaaacctattaatacatatgtatgtgccaaatggaaaattatg 597

                                                                       
Query: 241 gatattatataaggactgtacagtcatccaagcaaagacaagaatggttctcacagcagt 300
           || |  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 596 gagaacagataaggactgtacagtcatccaagcaaagacaagaatggttttcacagcagt 537

                                                                       
Query: 301 aacagcaaaagatggataacaatcattttgagtatattttaaatttaaagacattgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aacagcaaaagatggataacaatcattttgagtatattttaaatttaaagacattgaaat 477

                                                                       
Query: 361 ttgctgggacaaactactaggctaagacttagttagattgatagcaaagactttgagctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttgctgggacaaactactaggctaagacttagttagattgatagcaaagactttgagctg 417

                                                                       
Query: 421 aacaagtgagtaaagtgaatatttattgagatagaaaatgcaagaatactggactgctca 480
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 416 aacaagtgagtgaagtgaatatttattaagatagaaaatgcaagaatactggactgctca 357

                                                                       
Query: 481 gaggaagagcactagaacatttaattagcatgtatcaggaatgccatggttgaatccaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gaggaagagcactagaacatttaattagcatgtatcaggaatgccatggttgaatccaca 297

                                                                       
Query: 541 gcactgaaatggggaaatgatgcaattatattataaacatatacatgaaattgcaggaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gcactgaaatggggaaatgatgcaattatattataaacatatacatgaaattgcaggaac 237

                                               
Query: 601 aggcttgaagtaagcaagagattaatatgtctgatg 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 aggcttgaagtaagcaagagattaatatgtctgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)