CTTGGNTNNNNTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAGGAAATTCTCGTCAAAACGGCTGACTTGGTTT
TTGTTCCCCACCAGGACAGTCAATGGGGGCAAACACCAAAGAAAGATAAC
TGCTAGCCCTTTTGTGGGAAATAGGAAATGTTGACACCAGTGAGGATGGC
TGTAAGTGTATTTACAATATTGACACGAGATTGGCAGCTGCTCACATTCT
GCCTGAAAGGTTTACTACTGGCAGGGACTCCCAGCAGCTGCTTGCTGGGA
ACGTGAGAAAACATTTGGACAGTTAGGGTAGCCTGATTTCCCCCCTGAAA
ATCTGTTTGGCAAAACTTCCTGGCAGTTAATAAGATTATGTGAAAAAAAA
AAAAGATCTTTTAATGTGTTCACATCTCTTCATAAAACTTATATTGCCAA
TATAGATAATATTTTCAAAATCTATGATTTACAGAAATTTGATTGCTGAA
TAATGTTTCTTTATTAGATTGTACAAATGGGGACTGGATTACAAGGTAAT
ATTAGTATTTTTAATGAAAGTTCTCTTCACAGAGTAACTTTCCTTTTAAA
GAAATGACAAATTCCTGGGCTGGGGTACATTTTTAACAGAAAACTGAGAT
GAGAACAGAGACCATGATCCCACACTTTGTGATAAATTTGAAGTCTTCAT
TAAGAAATCAATTT

CTTTTTTTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGA
GCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGA
GTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTA
AAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTC
TTTTGCCTTGCAGAAACTTTGGAGTTTCATGAGGTCCCATTTGTCAATTC
TCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATGTTTCCCCT
GTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAG
TGTCTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAG
TGCAAGGAGATAAGTATGGATCGATTCGAATTCTTCTACATGATAACAAC
CAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCAATGGAT
GGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGGGTTCA
TTTCTGGGTCTTCAATTATATTCCATTGGTCTACTTGTCTGTCTCTATAC
CAGTACCATGCACTTTTTACCACAATTGCACTGTAGTAAAGCTTTTGGTC
AGGCATGGTGATTC

Query= MSMg01no503_i04.b1 MSMg01no503_i04.b1 CHROMAT_FILE:
MSMg01no503_i04.b1 PHD_FILE: MSMg01no503_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:48 2005
         (640 letters)



>mm_chr5_81556241_81557279
          Length = 1039

 Score = 1216 bits (629), Expect = 0.0
 Identities = 635/637 (99%), Gaps = 1/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaggaaattctcgtcaaaacggctgacttggtttttgttccccaccaggacag 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ggaattcaaggaaattcttgtcaaaacggctgacttggtttttgttccccaccaggacag 780

                                                                       
Query: 64  tcaatgggggcaaacaccaaagaaagataactgctagcccttttgtgggaaataggaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tcaatgggggcaaacaccaaagaaagataactgctagcccttttgtgggaaataggaaat 720

                                                                       
Query: 124 gttgacaccagtgaggatggctgtaagtgtatttacaatattgacacgagattggcagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gttgacaccagtgaggatggctgtaagtgtatttacaatattgacacgagattggcagct 660

                                                                       
Query: 184 gctcacattctgcctgaaaggtttactactggcagggactcccagcagctgcttgctggg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gctcacattctgcctgaaaggtttactactggcagggactcccagcagctgcttgctggg 600

                                                                       
Query: 244 aacgtgagaaaacatttggacagttagggtagcctgatttcccccctgaaaatctgtttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aacgtgagaaaacatttggacagttagggtagcctgatttcccccctgaaaatctgtttg 540

                                                                       
Query: 304 gcaaaacttcctggcagttaataagattatgtgaaaaaaaaaaaagatcttttaatgtgt 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 539 gcaaaacttcctggcagttaataagattatgtg-aaaaaaaaaaagatcttttaatgtgt 481

                                                                       
Query: 364 tcacatctcttcataaaacttatattgccaatatagataatattttcaaaatctatgatt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tcacatctcttcataaaacttatattgccaatatagataatattttcaaaatctatgatt 421

                                                                       
Query: 424 tacagaaatttgattgctgaataatgtttctttattagattgtacaaatggggactggat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tacagaaatttgattgctgaataatgtttctttattagattgtacaaatggggactggat 361

                                                                       
Query: 484 tacaaggtaatattagtatttttaatgaaagttctcttcacagagtaactttccttttaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tacaaggtaatattagtatttttaatgaaagttctcttcacagagtaactttccttttaa 301

                                                                       
Query: 544 agaaatgacaaattcctgggctggggtacatttttaacagaaaactgagatgagaacaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agaaatgacaaattcctgggctggggtacatttttaacagaaaactgagatgagaacaga 241

                                                
Query: 604 gaccatgatcccacactttgtgataaatttgaagtct 640
           |||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaccatgatcccacactttgtgataaatttgaagtct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1039
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1029
Effective search space:   648270
Effective search space used:   648270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)