BAC Information

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BAC

Clone NameMSMg01-503I13
Chromosome5 (Build37)
Map Location 32,638,394 - 32,638,535
singlet/doubletsinglet
Overlap genePlb1
Upstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217
Downstream geneEG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503I13.T7 (MSMg01no503_i13.b1)MSMg01-503I13.TJ (MSMg01no503_i13.g1)
ACCAG578628AG578629
length728713
length of high quality
(start - end)
144 (330 - 473)552 (89 - 640)
definitionCHROMAT_FILE: MSMg01no503_i13.b1 PHD_FILE: MSMg01no503_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:50 2005CHROMAT_FILE: MSMg01no503_i13.g1 PHD_FILE: MSMg01no503_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCCTTTCCCCAAAATTGCGGCGGTAAANGAACACATAGTTCAGAAC
ACCCGCGGATTCTGCCTTTTTCCGCTAAAGGTGGCTTGGTGCACGTGAGT
CAGACAGGTTTAAAGGCCTGGGTATGGAGCTGACTTCATGAGAGATTCCT
AGTTGCAAGCCTGAGCAGGTAGAAGGGACACTGCCTGGCTTCTGTGGGCT
GCCACGGAGGCAGAGTCCAGGGCGAGAGCCAGCAGTTGAGTCAGCGACTG
GCTGGTGAGCCAGGCTGCCTCATGGCTAGATGGGAGGTTCTGAGAGAAGG
AAGGGGTCTTTTTTCCTGATCTCTGTGTATATTTAATCTGCCCCAACCCA
CTGCTCCTCTTTTGGTAGGAGTGGTAATCTTATACCATATGTAGCTTCCA
AGGGGAAATGTGTTTTAAGGGTTTGGAAATTTAGGGTTGGTGTCTGGGAA
AAGGGGGAAAAAGTGTGTGTGGGCGGGGGGGTATTTCCNTCCTTTTTCTT
TTCTTTTTTTGCCCTCCCCTCTTGCCTTTCCCCCTTTTTTTTTTCTTTTC
CCCCCCCCCCCCCCCCTTTCTCCCTTTTTTCCCTTTTTCCCTCCCCTTCT
CTTTTTCCCTTTTTTTTTCTTTTACCTTACTTCCCCCTTTTTTTTTTCCC
CCTCTTTTTCCCCTTTCCCCCTTTTTTTTCCCTTTTTCTCTCTCTTCTTC
TTTCCCCTCTTTTTTCCCTTTTCCTCTC
TTTTTCTTTTTTTCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGATGAA
TACCGAATGGCTGAGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCA
TCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTC
AGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGGTGGCTAGGATG
GAGAAAGAGGAACCCTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAA
CCACTCTGGAAATCAGTCTGGCGGTTCCTCTTAAAATTGGACATAGTACT
ACCGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTC
CAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT
ATAATAGCCAGAAGCTTGAAAGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATATGGTACATTTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGC
ATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACTCACACAATATGTA
CTCACTGATAAGTGGATATTAGCCCAGAAACTTAGTATACCCCAGATATA
AAATACAATTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_i13.b1 MSMg01no503_i13.b1 CHROMAT_FILE:
MSMg01no503_i13.b1 PHD_FILE: MSMg01no503_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:50 2005
         (144 letters)



>mm_chr5_32638193_32638737
          Length = 545

 Score =  259 bits (134), Expect = 5e-74
 Identities = 140/142 (98%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   atttaatctgccccaacccactgctcctcttttggtaggagtggtaatcttataccatat 61
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atttaatccgccccaacccactgctcctcttttggtaggagtggtaatcttataccatat 284

                                                                       
Query: 62  gtagcttccaa-ggggaaatgtgttttaagggtttggaaatttagggttggtgtctggga 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 gtagcttccaagggggaaatgtgttttaagggtttggaaatttagggttggtgtctggga 224

                                 
Query: 121 aaagggggaaaaagtgtgtgtg 142
           ||||||||||||||||||||||
Sbjct: 223 aaagggggaaaaagtgtgtgtg 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 545
Length adjustment: 8
Effective length of query: 136
Effective length of database: 537
Effective search space:    73032
Effective search space used:    73032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)