Query= MSMg01no503_i17.b1 MSMg01no503_i17.b1 CHROMAT_FILE:
MSMg01no503_i17.b1 PHD_FILE: MSMg01no503_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:51 2005
(563 letters)
>mm_chr5_49508183_49509145
Length = 963
Score = 719 bits (372), Expect = 0.0
Identities = 411/424 (96%)
Strand = Plus / Minus
Query: 140 ggatgtggagaaagaggaacactccttcattcctggtgggattgcaaactggtacaacca 199
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 963 ggatgtggagaaagaggaacactccttcattcctggtgggattgcaaaatggtacaacca 904
Query: 200 ctctggaaatcagtctggcagttcctcagaaaattggacatagtactagtgtaggaacca 259
||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 903 ctctggaaatcagcctggcagttcctcagaaaattggacatagtactactggaggaacca 844
Query: 260 gctataccacacctaagcacatacccagaagatgctccgacatgtattaaggacacatgc 319
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 843 gctataccacacctaagcacatacccagaagatgctccaacatgtattaaggacacatgc 784
Query: 320 tccactatttatttattactttttctgctgttattgaaaatgtcatatacaaatactgta 379
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 783 tccactatttatttattaccttttctgctgtttttgaaaatgtcatatacaaatactgtg 724
Query: 380 tttacattgtttatctttagcatcttgatttatgtgcatatggatgtatttgtatggtag 439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttacattgtttatctttagcattttgatttatgtgcatatggatgtatttgtatggtag 664
Query: 440 gtacacatgagaatgtgttggctgtctgtggcaagttcccatgctatggcgggtacctgc 499
||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct: 663 gtacacatgagaatgtgttggctttctgtggcaagttcccacgctatggtgggtacctgc 604
Query: 500 aggccacatggctcaagccaggtgttctcatcttagctgattctctggctcaaggctacc 559
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agaccacatggctcaagccaggtgttctcatcttagctgattctctggctcaaggctacc 544
Query: 560 gaga 563
||||
Sbjct: 543 gaga 540
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_i17.g1 MSMg01no503_i17.g1 CHROMAT_FILE:
MSMg01no503_i17.g1 PHD_FILE: MSMg01no503_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:51 2005
(558 letters)
>mm_chr5_49469957_49470914
Length = 958
Score = 754 bits (390), Expect = 0.0
Identities = 434/454 (95%), Gaps = 10/454 (2%)
Strand = Plus / Plus
Query: 105 aaaggattttcctagacctgctggaactagatgtccaagggtagggttgtacacaagggg 164
||||||||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 315 aaaggatttgcctagacctgctggaact---------agggtagggttgtacac-agggg 364
Query: 165 gcctccccttctctgagaagaaggggtggggacaattttgagatgaatatgtaaggatag 224
||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||
Sbjct: 365 gcctccccttctctgagaaaaaggggtgggaacaattttgagatgaatatataaggatag 424
Query: 225 aactgggatgagaggaggggagtgtctgtgatttggatgtaaagtgaataaaagctaaaa 284
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aactgggatgagaggaggggaatgtctgtgatttggatgtaaagtgaataaaagctaaaa 484
Query: 285 taaaaacaaaaaatccaatggaaaacaaaatagaagggggtaaggactgacaaagcaagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 taaaaacaaaaaatccaatggaaaacaaaatagaagggggtaaggactgacaaagcaagt 544
Query: 345 tgttatacttcacttttattgttatacttctgtttttcttcaaacagatctatgaagaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 tgttatacttcacttttattgttatacttctgtttttcttcaaacagatctttgaagaaa 604
Query: 405 agcagcctggaatctttaatcatggaggcattctgttttctggcttcctttctagctcat 464
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 605 agcagcctggaatctttaatcatggaggcattctgtttcctggcttcctttctagctcat 664
Query: 465 gtgcagctagctttattgtaaagctagacctacatcccaagaaatggttctgtcacccct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gtgcagctagctttattgtaaagctagacctacatcccaagaaatggttctgtcacccct 724
Query: 525 gaattgtcctccctcatcaaccacccatccagac 558
||||||| ||||| ||||||||||||||| ||||
Sbjct: 725 gaattgttctcccacatcaaccacccatctagac 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
