Query= MSMg01no503_i20.b1 MSMg01no503_i20.b1 CHROMAT_FILE:
MSMg01no503_i20.b1 PHD_FILE: MSMg01no503_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:52 2005
(612 letters)
>mm_chr5_57180705_57181716
Length = 1012
Score = 1104 bits (571), Expect = 0.0
Identities = 599/609 (98%), Gaps = 3/609 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactgtagctgacacagtgataaatactataatgtctcattagatagctatggg 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 204 ggaattcactgtagctgaaacagtgataaatactataatgtctcattagatagttatggg 263
Query: 64 ttagttgtactaaaatcccaacattttattgagtaaaatgaacattgatggcttctagat 123
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 264 ttagttgtactaaaatcccaacattttattgagtagcacgaacattgatggcttctagat 323
Query: 124 tgtacagttcctacctctgctgatatattttcatatttttttttaaaaattataaatcag 183
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 324 tgtacagttcctacctctgctgatatattttcatattttttttt--aaattagaaatcag 381
Query: 184 atttcaaaaaattaagataaaatcttggaaaattgcattagttaagatttttattgctgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atttcaaaaaattaagataaaatcttggaaaattgcattagttaagatttttattgctgt 441
Query: 244 catagacaccataatctgaagcaacttatgtagaaaaggatttatttaaccttacatctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catagacaccataatctgaagcaacttatgtagaaaaggatttatttaaccttacatctt 501
Query: 304 gtcattccatcaccatgggaactaaaggcagtaacttggtagtgacaacaggagtttagg 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 gtcattccatcaccatgggaactaaaggcagtaacttggtagtgacgacaggagtttagg 561
Query: 364 tcctgaagaatctcaacatacttaattgaaaaatgcctccccctagacttgccaattagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcctgaagaatctcaacatacttaattgaaaaatgcctccccctagacttgccaattagc 621
Query: 424 cagtatgctggtcagaatattttctcaattgagttccattcttccacaatggctgtaaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagtatgctggtcagaatattttctcaattgagttccattcttccacaatggctgtaaca 681
Query: 484 tgtgtcatgttgacataaaaaaaaatacagtgcagtcatattgaagaagagcaaagaagt 543
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtgtcatgttgacataaaaaaaa-tacagtgcagtcatattgaagaagagcaaagaagt 740
Query: 544 caaacaatggacattagagagagaaagcatataatagaaatattcagctgtctttaagaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaacaatggacattagagagagaaagcatataatagaaatattcagctgtctttaagaa 800
Query: 604 tggcacaga 612
|||||||||
Sbjct: 801 tggcacaga 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no503_i20.g1 MSMg01no503_i20.g1 CHROMAT_FILE:
MSMg01no503_i20.g1 PHD_FILE: MSMg01no503_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:52 2005
(593 letters)
>mm_chr5_57350049_57351041
Length = 993
Score = 712 bits (368), Expect = 0.0
Identities = 377/380 (99%), Gaps = 1/380 (0%)
Strand = Plus / Minus
Query: 214 gagcaactcagcaggctgtatgtatgtactttattacacacacacacacaaacacatatt 273
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 826 gagcaactcagcaggctgtatgtatgta-tttaatacacacacacacacaaacacatatt 768
Query: 274 ttagggaaaatatgtcatgaatttgaaacagtagaatacaagttagggattggaggaaag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttagggaaaatatgtcatgaatttgaaacagtagaatacaagttagggattggaggaaag 708
Query: 334 aaaagagaataaggttaatatagttcccacataaaatatagaaaataaactcaaagtgtc 393
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aaaggagaataaggttaatatagttcccacataaaatatagaaaataaactcaaagtgtc 648
Query: 394 attgctaaaagtcctctggggaaacacaattaatgtataccccttcattttgcttttcta 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 attgctaaaagtcctctggggaaacacaattaatgtataccccttcattttgcttttcta 588
Query: 454 atagcaaagtgatgtagaatttcactaaagtttaatctgagaaactcagatggttataga 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 atagcaaagtgatgtagaatttcactaaagtttaatctgagaaactcagatggttataga 528
Query: 514 gcttttacagagaatgtattggctaatcaagactgattggagcatacttccatagccttt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gcttttacagagaatgtattggctaatcaagactgattggagcatacttccatagccttt 468
Query: 574 gtatccgttcctgcttccac 593
||||||||||||||||||||
Sbjct: 467 gtatccgttcctgcttccac 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
